Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1156 ATGGTCTCCCCCGAAACCACGAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTCCTGTTCCCGATTCCAATTTCTCTTGCTCCGTCCCACCCTCCAATCTCAGCGCCGAAATTGAAGGATCAATGGTCGAATCCGATGGCCTGAAGGAGCCTGGAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCAAAAGCATGTAGGGAGAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTGGAATTGGGTGCTATTCTGGAGCCTGGAAGGCCACCTAAGACCGACAAGGCTGCCATTTTGATTGATGCTGTTCGAATGGTCACTCAGTTACGTGGTGAAGCCCAGATGTTGAAGGACTCAAATACAAGTCTATCAGAGAAGATTAAAGAGTTGAAGGCTGAGAAGAATGAGCTTCGTGATGAGAAGCAGAGGTTAAAACTGGAGAAAGAGAAGTTGGAGCAGCAACTAAAATCCATGAATTCACAATCTGGCTTCTTGCCTCCAGCCATCCCTGCAACTTTTGCTGCTCAAGGCCAAGCACCCGGAAACAAGTTGGTTCCTTTCATCAGCTACCCAGGAGTTGCTATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCGCAAGATCACCTTGTTCTCGATGTTGGATTTGTTTCGAGGGCTTCGCAGCTTGTTCTCGATGTTAAATTTGGATCGAGGGCTTCGCAGCTTGTTCTCGATGTTGAATTTGGATCGAGGGCTTCGCAGCTTGTTCTCGATGTTGAATTTGGATCGAGGGCTTCACAGCTTGTTCTCGATGTTGAAGGATTCAGCTTGTTCTCGATGTTGAATTTGGATCGAGGGCTTCGCAGCTTGTTCTCGATGTTGAAGGATTCAGCTTGTTCTCGATGTTGA 915 47.43 MVSPETTNWLFDYALMDDIPVPVPDSNFSCSVPPSNLSAEIEGSMVESDGLKEPGKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMVTQLRGEAQMLKDSNTSLSEKIKELKAEKNELRDEKQRLKLEKEKLEQQLKSMNSQSGFLPPAIPATFAAQGQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHLVLDVGFVSRASQLVLDVKFGSRASQLVLDVEFGSRASQLVLDVEFGSRASQLVLDVEGFSLFSMLNLDRGLRSLFSMLKDSACSRC 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25726839 25731683 - Hsped.07g11560.1 Hepe07g1156 574551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1156 304 Coils Coil 120 168 - -
Hepe07g1156 304 Pfam Helix-loop-helix DNA-binding domain 69 117 IPR011598 GO:0046983(InterPro)
Hepe07g1156 304 PANTHER BHLH TRANSCRIPTION FACTOR 8 219 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Hepe07g1156 304 SMART finulus 71 122 IPR011598 GO:0046983(InterPro)
Hepe07g1156 304 FunFam Transcription factor bHLH34 56 114 - -
Hepe07g1156 304 CDD bHLH_AtILR3_like 73 145 - -
Hepe07g1156 304 Gene3D - 67 143 IPR036638 GO:0046983(InterPro)
Hepe07g1156 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 116 IPR011598 GO:0046983(InterPro)
Hepe07g1156 304 MobiDBLite consensus disorder prediction 48 68 - -
Hepe07g1156 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 141 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1592 Hepe-Chr4:71405335 Hepe07g1156 Hepe-Chr7:25726839 1.23e-09 dispersed
Hepe07g1156 Hepe-Chr7:25726839 Hepe08g0487 Hepe-Chr8:4274991 9.86e-59 dispersed
Hepe09g0127 Hepe-Chr9:1013728 Hepe07g1156 Hepe-Chr7:25726839 5.93e-06 dispersed
Hepe07g1156 Hepe-Chr7:25726839 Hepe01g1311 Hepe-Chr1:78330567 6.09e-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55969 PF00010 HLH 1.70E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1156 - - - 0.0