Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1169 ATGCAAATATTTGTGAAGACCCTAACTGGAAAGACCATCACATTGGAGGTCGAGAGCTCGGACACTATCGACAATGTGAAGGCTAAAATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAAAGGCTTATTTTCGCTGGAAAGCAATTGGAGGGATGGACGCACATTGGCTGA 174 47.13 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGWTHIG 57
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26828912 26829085 + Hsped.07g11690.1 Hepe07g1169 574564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1169 57 FunFam Polyubiquitin-C 1 56 - -
Hepe07g1169 57 PRINTS Ubiquitin signature 32 52 IPR019956 -
Hepe07g1169 57 PRINTS Ubiquitin signature 11 31 IPR019956 -
Hepe07g1169 57 SUPERFAMILY Ubiquitin-like 1 54 IPR029071 -
Hepe07g1169 57 ProSiteProfiles Ubiquitin domain profile. 1 51 IPR000626 GO:0005515(InterPro)
Hepe07g1169 57 Gene3D - 1 51 - -
Hepe07g1169 57 Pfam Ubiquitin family 3 55 IPR000626 GO:0005515(InterPro)
Hepe07g1169 57 PANTHER UBIQUITIN 1 51 IPR050158 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER)
Hepe07g1169 57 SMART ubq_7 1 57 IPR000626 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1169 K08770 - - mtr:11443904 102.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1169 Hepe-Chr7:26828912 Hepe07g1268 Hepe-Chr7:37054331 1.32e-28 dispersed
Hepe07g1168 Hepe-Chr7:26828457 Hepe07g1169 Hepe-Chr7:26828912 2.32e-29 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g452 . Blo03g01438 Bda07g00342 . Bpe09g00191 . . Bma13g01031 Cmo16g00914 . Cma01g01148 Cma09g00931 . . . . . Bhi09g01937 . . . . Mch11g1159 . Cla10g00532 Cam10g0530 Cec10g0548 Cco10g0537 Clacu10g0553 Cmu10g1378 Cre10g0781 . . . . . Csa03g00539 Chy04g00990 Cme06g02295 . Blo10g00807 . Bda12g00892 . . . Bma14g00353 Sed14g1362 Cmo01g01200 Cmo09g00928 . . . . . . Bhi11g00652 Tan01g1675 Cmetu04g0112 . Hepe07g1169 Mch10g1199 . Cla05g01530 Cam05g1639 Cec05g1643 Cco05g1676 Clacu05g1630 Cmu05g1526 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000061 12 9 9 13 10 12 1 13 13 6 9 12 13 5 12 15 12 6 1 12 9 11 13 12 3 0 11 14 12 7 287