Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1201 ATGGGCCTGGTGGGCTTGGGCCTGGATCCAATGGGCTTGGGCTTTGGGCCCAATGGACTTTTGAATCTTGGGCCTGGGCTTGATCTTTGGGCCAAATTGTCTTTTGCATATCTTTCTGGCCCGATTCGATTTCGAGCCCAATTGCAGTTTGACCGAATTTGCTCGGTCAAGTCTATCTCCGGTCGTGATAGGGACACTGAAGATCAAAATTTAGAGCAGAAGAAGACATTGGAGGCGCAAGGCAAAACCACGTCAATGGAAGAGCAGAGGAAGAACTCGTTGATGGGCTTGATTATTCTCACAATCTTCGTTTCGGGTTCCAGAGGTTGGACCGGGGAAATCCATGGCCGAGTTATCTGCGATGTCTGTGGCGATTCTTCTATTGGCCCAGAAGACCATGTTCTTGAAGGTGCTGAAGTAGCAGTTCTTTGCATAACAAGATCAGGAGAAGTTCTAAACTACCAGGCATTTACAAATTCCAAGGGTAAATACAATGTTGCAGAGACGATGTCGGAAAGTGACCGTTGGGATGCATGTCTCGCTCGGCCGATCAGCAGTTTCCATGAACATTGCACCCATCTCGGTGCCAATAGCTCGGGATTGAAGTTCAGTTACAATCATCCATCTGGCCACTCTCACACTGTCAGGCCTTTCGTCTATCGACCAAGCAGCGTGCCAACATACTGCATTTGA 693 48.63 MGLVGLGLDPMGLGFGPNGLLNLGPGLDLWAKLSFAYLSGPIRFRAQLQFDRICSVKSISGRDRDTEDQNLEQKKTLEAQGKTTSMEEQRKNSLMGLIILTIFVSGSRGWTGEIHGRVICDVCGDSSIGPEDHVLEGAEVAVLCITRSGEVLNYQAFTNSKGKYNVAETMSESDRWDACLARPISSFHEHCTHLGANSSGLKFSYNHPSGHSHTVRPFVYRPSSVPTYCI 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29124712 29127490 + Hsped.07g12010.1 Hepe07g1201 574596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1201 230 Pfam Pollen protein Ole e 1 like 114 200 - -
Hepe07g1201 230 PANTHER OS02G0317800 PROTEIN 86 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1201 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1201 Hepe-Chr7:29124712 Hepe09g1426 Hepe-Chr9:27077532 1.83e-16 dispersed
Hepe03g0933 Hepe-Chr3:43377205 Hepe07g1201 Hepe-Chr7:29124712 1.15e-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g483 . . . . Bpe09g00182 . . Bma13g01050 . . . . . . . . . . . . . . . . Cla10g00516 Cam10g0511 Cec10g0528 Cco10g0515 Clacu10g0532 Cmu10g1358 Cre10g0762 . . . . . Csa03g00524 . Cme06g02264 . Blo10g00820 . Bda12g00901 . . . . Sed07g1921 . . Cma04g00952 . . . . . Bhi11g00632 Tan01g1693 Cmetu06g0543 . Hepe07g1201 Mch10g1254 . . . . . . . . Lsi05g00609 . Chy06g01806 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006066 1 1 1 9 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 38