Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1387 ATGGAGCTGACTACTCAAGATCCTCCAATTTCCATCCCCATTCCCATCCCTTTAAATAGTCGTTACGGCGGTCACGACCACGACCACATCATCCACCATCATGACCCCTCCATCACGCGCAACCACATCATCGCGGCGGCGGTCAACGGTGGCAGTCCACTCCCAACCTCTCAAATGGAAGCTGATCTCCACCACCACAATCACCACCATAATAACAACAATAACAACAGTACCAACAAGAAGCATGTCAAATACAAAGAGTGTCTCAAAAATCACGCCGCCTCCATGGGAGGCAATGCCACCGATGGCTGCGGCGAGTTCATGCCGAGTGGAGAAGAAGGCTCCATTGAAGCCCTCACATGCTCTGCCTGCAACTGTCACAGAAACTTCCACCGGAAAGAGATCGACGGGGAGTCCTATGACTGGCTCCACCACCCCCGCCTCGGGCGGAAGCTCCTCGTCGGAGGGAAGAACATGATCGCCCCGCCAGAGGCCGCCGCATTTGCGTATCCCACCGCAGCGGGGACAGCGTTCATATCATCCAGAGCAGCGGCAGCACAACCCCACCACATGATAATGTCGTACAACATGCTCGGCGGGGGAGGCGGGCACTCGGAGTCGGAGGACCAGGAGGAGGCAGCAGGTCCTGGGAATGGGGCGAGGGCGTATTCGGGGCACATGATGAATAAGAAGCGGTTCCGAACGAAGTTCACGGCGGAGCAGAAGGAGAAGATGCTGAGGTTTGCAGAGAAAGTTGGATGGAAGATTCAGAAGCAAGAAGAGAGTGTGGTGCAGCAATTCTGTCAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGCCAAGAAGGATACTATTTCCCCTTCCCAGTCTCCTACTCCCTTAAATTAA 918 53.92 MELTTQDPPISIPIPIPLNSRYGGHDHDHIIHHHDPSITRNHIIAAAVNGGSPLPTSQMEADLHHHNHHHNNNNNNSTNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDGESYDWLHHPRLGRKLLVGGKNMIAPPEAAAFAYPTAAGTAFISSRAAAAQPHHMIMSYNMLGGGGGHSESEDQEEAAGPGNGARAYSGHMMNKKRFRTKFTAEQKEKMLRFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKDTISPSQSPTPLN 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 45655355 45656555 + Hsped.07g13870.1 Hepe07g1387 574782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1387 305 MobiDBLite consensus disorder prediction 201 224 - -
Hepe07g1387 305 FunFam Zinc-finger homeodomain protein 2 218 291 - -
Hepe07g1387 305 Gene3D - 217 292 - -
Hepe07g1387 305 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 85 134 IPR006456 -
Hepe07g1387 305 Pfam ZF-HD protein dimerisation region 83 135 IPR006456 -
Hepe07g1387 305 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 65 288 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Hepe07g1387 305 NCBIfam homeobox domain, ZF-HD class 230 286 IPR006455 -
Hepe07g1387 305 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 84 135 IPR006456 -
Hepe07g1387 305 SUPERFAMILY Homeodomain-like 218 291 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1387 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3166 Hepe-Chr2:81147527 Hepe07g1387 Hepe-Chr7:45655355 3.53e-21 dispersed
Hepe07g1387 Hepe-Chr7:45655355 Hepe10g0633 Hepe-Chr10:7943709 6.76e-53 dispersed
Hepe02g2004 Hepe-Chr2:42036196 Hepe07g1387 Hepe-Chr7:45655355 2.58e-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe07g1387 . 83 292 ZF-HD Transcription Factor Family AT2G02540 53.2 1.8e-52 203.4
Hepe07g0601 . 58 213 ZF-HD Transcription Factor Family AT4G24660 54.7 1.3e-47 186.8
Hepe02g1975 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g2004 . 1 254 ZF-HD Transcription Factor Family AT5G39760 55.3 3.4e-52 202.6
Hepe02g3167 . 33 288 ZF-HD Transcription Factor Family AT5G39760 56.0 2.0e-49 193.4
Hepe10g1740 . 18 204 ZF-HD Transcription Factor Family AT1G69600 50.5 4.0e-47 185.3
Hepe02g1975 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g2004 . 1 262 ZF-HD Transcription Factor Family AT5G15210 53.2 1.1e-53 207.2
Hepe02g3167 . 14 274 ZF-HD Transcription Factor Family AT5G15210 51.3 1.1e-48 190.7
Hepe07g1387 . 80 295 ZF-HD Transcription Factor Family AT1G14440 53.0 3.4e-54 209.1
Hepe02g1975 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g2004 . 1 249 ZF-HD Transcription Factor Family AT3G28920 60.6 2.8e-61 232.6
Hepe02g3167 . 25 276 ZF-HD Transcription Factor Family AT3G28920 59.1 3.6e-56 215.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010486 1 0 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55977 PF04770 ZF-HD_dimer 3.00E-29 No_clan Hepe TF