Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1454 ATGGACTCTAGTGATGTTGAGGAATCCTTGCTTCCTATGCTTCCTAAGCTGTTCGATCCCGATAAGAGGAAATCTCTCCAGAGAAGAAAATCTAACCGTCGTGGTAATTTTTCACTTTCGGTAGAAAATAATAATCAACCACAAAATTGTGAGGAAGTGTCTCATCAATGTACGGTTGTTACACAAGTTAGTTTTAGGAAAGTATTTGTTATGCTGGCTTCTTATTTGGGAGGAGGCACACTTTGTTTCTTCCTTGTTCAGGATCAGATCAATGGCAAAAAAACAAACGGGATTGTTGATGCCATTTACTTTTGTGTTGTGACAATGACCACTGTTGGATATGGTGATCTTGTTCCTAACAGCATAGTTGCAAAACTACTTGCATGTGCTTATGTCTTCACTGGAATAACTCTTGGTGGGATGATTCTTAGCAAGGCGGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGTACATGAGGAAAGAGGTCAGCTCCGGTGAGATCCTTCAGGAATCTAAGGCTCACAAAATCGAATACAAATTCATTATGACTGGAATCGTCCTTTGGGTTCTCGTTGTTGTTGGAACTCTTTTCTTGACTATGGTTGAGAAGTTAGAGTTCATAGATGCCTTTTATTGCGTTTGTTCCACAATCACGACTCTTGGCTATGGGGATGAGAGTTTCTCTACAACAGCCGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTGGCACAGTTCTTTCTGTACCTCGCAGAATTACACACAGAAAGGAGACAGAAATCGCTGGTGAATTGGGTTCTCACCCGAAGCCTTACATACTCAGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCAGAATTTGTTATATATAAACTGAAGGAAATGGGGAAGATCAATCAGGAAGACATTTCACCCATACTCGACACTTTTAAGAAGCTTGACATTGATCAATCAGGAAGTTTAACAGAAGCTGATTTAGTATATCCGCAGTTGTCGGCTTAA 1047 40.59 MDSSDVEESLLPMLPKLFDPDKRKSLQRRKSNRRGNFSLSVENNNQPQNCEEVSHQCTVVTQVSFRKVFVMLASYLGGGTLCFFLVQDQINGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIVAKLLACAYVFTGITLGGMILSKAADYIVEKQEILLVKAMYMRKEVSSGEILQESKAHKIEYKFIMTGIVLWVLVVVGTLFLTMVEKLEFIDAFYCVCSTITTLGYGDESFSTTAGRVFAVIWIMSSTICLAQFFLYLAELHTERRQKSLVNWVLTRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDISPILDTFKKLDIDQSGSLTEADLVYPQLSA 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 48599026 48602903 + Hsped.07g14540.1 Hepe07g1454 574849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1454 348 Pfam Ion channel 71 151 IPR013099 -
Hepe07g1454 348 Pfam Ion channel 192 263 IPR013099 -
Hepe07g1454 348 Gene3D - 285 344 - -
Hepe07g1454 348 PRINTS Two pore domain K+ channel signature 224 233 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Hepe07g1454 348 PRINTS Two pore domain K+ channel signature 107 135 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Hepe07g1454 348 SUPERFAMILY EF-hand 274 342 IPR011992 -
Hepe07g1454 348 ProSitePatterns EF-hand calcium-binding domain. 329 341 IPR018247 -
Hepe07g1454 348 Gene3D - 164 276 - -
Hepe07g1454 348 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 64 317 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(PANTHER)|GO:0071805(InterPro)
Hepe07g1454 348 SUPERFAMILY Voltage-gated potassium channels 64 162 - -
Hepe07g1454 348 SUPERFAMILY Voltage-gated potassium channels 182 279 - -
Hepe07g1454 348 Gene3D - 60 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1971 Hepe-Chr4:74549723 Hepe07g1454 Hepe-Chr7:48599026 1.26e-59 dispersed
Hepe07g1454 Hepe-Chr7:48599026 Hepe10g1881 Hepe-Chr10:55600857 1.01e-119 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1454 K05389 - csv:101214791 569.311