Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1493 ATGACGAGAAAGAAGGTGAAACTGGCATTCATCACAAACGACGCAGCAAGAAAAGCTACTTTCAAGAAAAGGAAAAAGGGCTTATTGAAAAAGATCACAGAACTCACCACTCTCTGCGGGATCGAGGCGTGCGCCGTAATCTTCAGCCCCTTCGATTCCCACCCCGACATCTGGCCCTCCGCCGTCGGCGTCCAGAGGGTTCTCTCTAAGTTCACAAGCCTGCCGGAGATGGAGCAGTCCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATCGCCAAGGCTGCGGACCAGCTCAAGAAGCTGCAGAGGGAGAATCGCGAGAAGGAGATCACCAACATCATGTTTCGGAGCCTCGTCACCGGAGGAGCGCCGCTGCCCGGTCTCAATGTGGTTGATTTGAATGATCTTGGTTGGCTGGTTGATCAGAAGTTGGCTGATATTTGCAAGAGGATGGAGTTGCTTACCGCTGCAGTGGCGAACCAACCGTCGTGTGTGGCGGCGATGGAACCGTCGTGGTTCTTGGAGATGGTGAGTCAAGGAGATGATGATCAAATAGGATTCAATATTGGGGATGATGTGATTCAGCTTCCTAGTTTTGGGGAGGATGAGAACCATGGTGCTTTTTTGTCAAATAATAATGCCTTTTTCCCATGA 663 51.28 MTRKKVKLAFITNDAARKATFKKRKKGLLKKITELTTLCGIEACAVIFSPFDSHPDIWPSAVGVQRVLSKFTSLPEMEQSKKMVNQETFLRHRIAKAADQLKKLQRENREKEITNIMFRSLVTGGAPLPGLNVVDLNDLGWLVDQKLADICKRMELLTAAVANQPSCVAAMEPSWFLEMVSQGDDDQIGFNIGDDVIQLPSFGEDENHGAFLSNNNAFFP 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 50135630 50136292 - Hsped.07g14930.1 Hepe07g1493 574888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1493 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Hepe07g1493 220 Coils Coil 87 114 - -
Hepe07g1493 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 PANTHER MADS BOX PROTEIN 1 114 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g1493 220 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0454 Hepe-Chr5:6000375 Hepe07g1493 Hepe-Chr7:50135630 2.21e-39 dispersed
Hepe07g1493 Hepe-Chr7:50135630 Hepe09g1768 Hepe-Chr9:55316883 1.90e-80 dispersed
Hepe07g1493 Hepe-Chr7:50135630 Hepe08g1226 Hepe-Chr8:12855178 2.47e-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55980 PF00319 SRF-TF 2.80E-17 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1493 - - - 0.0