Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1493 ATGACGAGAAAGAAGGTGAAACTGGCATTCATCACAAACGACGCAGCAAGAAAAGCTACTTTCAAGAAAAGGAAAAAGGGCTTATTGAAAAAGATCACAGAACTCACCACTCTCTGCGGGATCGAGGCGTGCGCCGTAATCTTCAGCCCCTTCGATTCCCACCCCGACATCTGGCCCTCCGCCGTCGGCGTCCAGAGGGTTCTCTCTAAGTTCACAAGCCTGCCGGAGATGGAGCAGTCCAAGAAGATGGTCAACCAAGAGACCTTCCTCCGCCACCGCATCGCCAAGGCTGCGGACCAGCTCAAGAAGCTGCAGAGGGAGAATCGCGAGAAGGAGATCACCAACATCATGTTTCGGAGCCTCGTCACCGGAGGAGCGCCGCTGCCCGGTCTCAATGTGGTTGATTTGAATGATCTTGGTTGGCTGGTTGATCAGAAGTTGGCTGATATTTGCAAGAGGATGGAGTTGCTTACCGCTGCAGTGGCGAACCAACCGTCGTGTGTGGCGGCGATGGAACCGTCGTGGTTCTTGGAGATGGTGAGTCAAGGAGATGATGATCAAATAGGATTCAATATTGGGGATGATGTGATTCAGCTTCCTAGTTTTGGGGAGGATGAGAACCATGGTGCTTTTTTGTCAAATAATAATGCCTTTTTCCCATGA 663 51.28 MTRKKVKLAFITNDAARKATFKKRKKGLLKKITELTTLCGIEACAVIFSPFDSHPDIWPSAVGVQRVLSKFTSLPEMEQSKKMVNQETFLRHRIAKAADQLKKLQRENREKEITNIMFRSLVTGGAPLPGLNVVDLNDLGWLVDQKLADICKRMELLTAAVANQPSCVAAMEPSWFLEMVSQGDDDQIGFNIGDDVIQLPSFGEDENHGAFLSNNNAFFP 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 50135630 50136292 - Hsped.07g14930.1 Hepe07g1493 574888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1493 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
Hepe07g1493 220 Coils Coil 87 114 - -
Hepe07g1493 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 PANTHER MADS BOX PROTEIN 1 114 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g1493 220 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1493 220 FunFam agamous-like MADS-box protein AGL80 13 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1493 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g0454 Hepe-Chr5:6000375 Hepe07g1493 Hepe-Chr7:50135630 2.21e-39 dispersed
Hepe07g1493 Hepe-Chr7:50135630 Hepe09g1768 Hepe-Chr9:55316883 1.90e-80 dispersed
Hepe07g1493 Hepe-Chr7:50135630 Hepe08g1226 Hepe-Chr8:12855178 2.47e-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
Hepe10g1754 . 1 340 Type I MADS-box Gene Family AT2G03060 51.0 6.9e-94 341.3
Hepe07g2502 . 1 257 Type I MADS-box Gene Family AT2G03060 53.2 1.5e-67 253.8
Hepe07g0389 . 1 176 Type I MADS-box Gene Family AT5G60440 59.2 1.3e-50 197.2
Hepe09g1768 . 1 156 Type I MADS-box Gene Family AT5G48670 64.7 3.6e-51 199.1
Hepe07g1493 . 1 157 Type I MADS-box Gene Family AT5G48670 59.2 4.4e-49 192.2
Hepe07g0389 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 6.4e-38 154.8
Hepe07g0652 . 1 174 Type I MADS-box Gene Family AT1G77950 59.9 3.9e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55980 PF00319 SRF-TF 2.80E-17 No_clan Hepe TF