Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1708 ATGTCTTTGCTCCGACCTTACGGTAAGGTCGACGAAACCGACCAACTGAGGCTCGACGCTAGACGGAGGACTCGGAAGAGGATTGCTGTCATTGTCTTGTCCTCTGTTGTTCTTGTAGGTGTTGTTGTTGGTGTTGTGTTTGGGACTAGAAACAATGGTTCCAACAATGATGACACTAACAATCAAAATGGTGCTCTTTCAACTTCCATCAAAGCAGTTTGTGATGTGACTTTGTATCCTGATACTTGTTACAATTCTTTTGGTCCTTTGGCTAACTCGAGCCACCTCGACCCCGGTCAGATATCCAAGCTTTCGGTTCAATTGGCGCTCAGCGAATTGTCGCGAGTAGCTGACTACATTTTTGATCATGCCATTACCAATTCAACTGATAATATGACCATATTGGCTTTGACAAATTGTCATGAACTTTTGGACTTGGCATTGGATCATTTGAACATCTCATTGTCTTCTAGTGAGATTACATTGCTGAAAGCTGTGGATGATTTGCAAACATGGCTAACTTCAGCAGCTACTTACCAGCAGACTTGCATCGACGGCCTCGGGGATGTCGATCCGACTTTGTCGAACATCATTACAAATTACTTGAAGAACTCCACTGAATTGACCAGCAATGGCCTTGCCATCGTGTCCTTCTTTTCGAAGCTTACGAATTCTTTCAATCTACGACGATTGATGAGTTATGAAGGTCACCAAAGTAATGGAGATTGGGCGCACCCGATACTCCGAAAGCTAGCTCAGACTGATCTCAGGAAGCAGGCTGACATTGTCGTAGCGAAAGACGGTTCGGGGAAGTACAAAACAATCACTGCAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAACTGTGATCTATGTGAAGAAGGGAACTTATAAGGAGAATGTTGAAGTTGTGAAGAACAAATGGAATGTGGTGATGATTGGTGATGGAATGACTTCAACCACAGTAACTGCCAGCCTCAACTTCATTGATGGGACTCCAACTTTTGCATCTGCAACATTTGCTGCAAAGGGAAAAGGCTTCATTGCCATAGACATGGGATTCCAGAACACCGCTGGACCGAGCAAACACCAGGCAGTCGCTCTGATGTCGACATCCGACCAATCGATCTTCTACCGTTGTCAAACAGACGCATATCAAGACACTCTCTACGCGCACTCCAACCGTCAATTCTACCGTGAATGCCAGATTCACGGCACGGTCGATTTCATCTTTGGAAACTCGGCCGTAGTCCTACAAAACTGCACCATTGCCCCCAGGTTGCCTCTTTTAGGCCAACAAAACACAATCACAGCTCAAGGCAGGTTTGATCCTAATCAAAACACCGGCATTTCGATACAAGACTCTTCGATCCAACCGTTCGAGAACTTGCAAACAACAAAAACTTACCTCGGTCGACCGTGGAAGAACTACTCGACAACCGTGTTTATGCAGAGCTATTTGGGGAGCTTGATTGACCCAACTGGCTGGCTGCCTTGGGTTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACAGCCAAAAGAGTCAAATGGAAGGGTGTGAGGAACATTGACCTCAAAACTGCCAAAAAATTCACAGTTTCCTCATTCATTGATGGAAATGATTGGATCTCACAGGCAAAAGTTCCCTTCAAAGCCAGCATTTGA 1704 45.36 MSLLRPYGKVDETDQLRLDARRRTRKRIAVIVLSSVVLVGVVVGVVFGTRNNGSNNDDTNNQNGALSTSIKAVCDVTLYPDTCYNSFGPLANSSHLDPGQISKLSVQLALSELSRVADYIFDHAITNSTDNMTILALTNCHELLDLALDHLNISLSSSEITLLKAVDDLQTWLTSAATYQQTCIDGLGDVDPTLSNIITNYLKNSTELTSNGLAIVSFFSKLTNSFNLRRLMSYEGHQSNGDWAHPILRKLAQTDLRKQADIVVAKDGSGKYKTITAALKAVPDKSKKRTVIYVKKGTYKENVEVVKNKWNVVMIGDGMTSTTVTASLNFIDGTPTFASATFAAKGKGFIAIDMGFQNTAGPSKHQAVALMSTSDQSIFYRCQTDAYQDTLYAHSNRQFYRECQIHGTVDFIFGNSAVVLQNCTIAPRLPLLGQQNTITAQGRFDPNQNTGISIQDSSIQPFENLQTTKTYLGRPWKNYSTTVFMQSYLGSLIDPTGWLPWVGTSAPDTIFYAEFQNYGPGSSTAKRVKWKGVRNIDLKTAKKFTVSSFIDGNDWISQAKVPFKASI 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 58901776 58903743 - Hsped.07g17080.1 Hepe07g1708 575103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1708 567 SMART PMEI_2 65 215 IPR006501 GO:0004857(InterPro)
Hepe07g1708 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857(InterPro)
Hepe07g1708 567 FunFam Pectinesterase 66 220 - -
Hepe07g1708 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Hepe07g1708 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Hepe07g1708 567 Pfam Pectinesterase 261 553 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe07g1708 567 SUPERFAMILY Pectin lyase-like 259 564 IPR011050 -
Hepe07g1708 567 PANTHER PECTINESTERASE 27 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe07g1708 567 FunFam Pectinesterase 255 567 - -
Hepe07g1708 567 NCBIfam pectinesterase inhibitor domain 65 216 IPR006501 GO:0004857(InterPro)
Hepe07g1708 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Hepe07g1708 567 Gene3D - 256 567 IPR012334 -
Hepe07g1708 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Hepe07g1708 567 CDD PMEI-like_3 72 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1577 Hepe-Chr2:20936185 Hepe07g1708 Hepe-Chr7:58901776 2.70e-150 dispersed
Hepe07g1708 Hepe-Chr7:58901776 HepeContig65g0052 Hepe-ChrContig65:5122475 4.22e-137 dispersed
Hepe07g2522 Hepe-Chr7:69546180 Hepe07g1708 Hepe-Chr7:58901776 1.85e-18 dispersed
Hepe01g0038 Hepe-Chr1:5517320 Hepe07g1708 Hepe-Chr7:58901776 4.07e-113 wgd
Hepe07g1708 Hepe-Chr7:58901776 HepeContig66g0115 Hepe-ChrContig66:7762778 3.22e-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1708 - - - 0.0