Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1737 ATGGGCAGCATCAACTATGACGTTAATGAAGTCGAGAACAACAACATTCATGTTGTGAATCCTCTAGATCCAGAGGAATTCAGAAGCCAAGCATACAAAGTTGTGGACTTCATTGCAGATTATTACAAAAACATCGAACAATTCCCAGTTCTCAGCCAAGTTCTTCCTGGTTATCTCCGAAAAACAATCCCGGAAGAATCTGCTCCAAATGCTCCCGAATCCTTGGAATCCATTCTTCAAGATGTCACCCGACATGTCGTTCCGGGCCTCACTCACTGGCAACACCCCAACTTTTACGCTTACTTTTCCGCCAGTAACAGCACCGCCGCTCTTCTCGGAGAAATGCTCGCCACTGGCTTCAGTGTCATTGGTTTCAACTGGCTGTCCTCGCCGGCGGTCACCGAGCTTGAGATGTTGGTTGTTGATTGGTTGGGTGATATGCTTAACCTTCCCAAATCTTTCCTCTTCTCCGGCGGTGGCGGCGGCGTTCTTCAGGGGACGACTTGTGAAGCAATTTTATGCACTCTGGTGGCTGCGAGGGACCAGAAGCTTAAACAAATTGGAAGAGATAAATTTAGTAAGCTTGTTGTTTATGCTTCCGACCAAACTCATATGTGCCTACAGAAGGCCGCACGGATTGCAGGTTTTGACGAAGAAAATTTCCGAGTCATTCAAACAACTAAATCAGAGTTATTTGCGCTATCTCCAAACTCTTTTAAAATGGCAATTCAATCCGACATTGAAAAAGGGTTTGTCCCATTATACCTATGTGCAACAATCGGAACAACTTCGACCAACGCCGTGGACCCACTCGACCCACTTTGCGATATTGCACAACAAAACGGAATTTGGGTTCACGTGGACGCTGCATACGCCGGAAGCGCCTTCATCTGCCCGGAGTTCCGACATTTCATCAACGGCGTGGAGAAAGTAAATTCATTCAGCTTGAACGCTCACAAGTGGTTATTTTCAGCGCCAGAATGTTGCTGTATGTGGCTGAAGAATCCGCCGGCGTTGATAAACTCTCTCTCAATGTACCCTCCGTATTTGAGAAACAAAGCGACCGATTCCGGCGAAGTGGTGGACTACAAAGATTGGCAGTTTACGCTCAGCAGAAGGTTTCGAGCAATAAAATTATGGGTTGTGATGAAAAGCTACGGAGTGACTAATTTGAGGAATTTCATTCGGCAACATGTGAAAGTTGCGAAGCTTTTTGAGGAACTTATCCAGAAGGATGAGAGGTTTGAGGTTGTCGTTCCTAGGAATTTCGGGCTGGTTTGTTTTCGATTGTCGTTTCCAGAAGTCGACAAGTCGAATACGATAAACGCAAAATTGTTGGAGGCGATTAATAAGTCGGGAAAAGCTTTCATGATGCAAACGGTGGTCGAAGGAATGTATGTGATTCGATTTTCCCTTGGTGTGACGATAACGGAGGAACGACATGTCGTCACGACGTGGAAGCTGGTGCAGGAACTGGCAGAGAAGGTCGTAGAGGGTGTTTAA 1503 46.17 MGSINYDVNEVENNNIHVVNPLDPEEFRSQAYKVVDFIADYYKNIEQFPVLSQVLPGYLRKTIPEESAPNAPESLESILQDVTRHVVPGLTHWQHPNFYAYFSASNSTAALLGEMLATGFSVIGFNWLSSPAVTELEMLVVDWLGDMLNLPKSFLFSGGGGGVLQGTTCEAILCTLVAARDQKLKQIGRDKFSKLVVYASDQTHMCLQKAARIAGFDEENFRVIQTTKSELFALSPNSFKMAIQSDIEKGFVPLYLCATIGTTSTNAVDPLDPLCDIAQQNGIWVHVDAAYAGSAFICPEFRHFINGVEKVNSFSLNAHKWLFSAPECCCMWLKNPPALINSLSMYPPYLRNKATDSGEVVDYKDWQFTLSRRFRAIKLWVVMKSYGVTNLRNFIRQHVKVAKLFEELIQKDERFEVVVPRNFGLVCFRLSFPEVDKSNTINAKLLEAINKSGKAFMMQTVVEGMYVIRFSLGVTITEERHVVTTWKLVQELAEKVVEGV 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 59539392 59546383 + Hsped.07g17370.1 Hepe07g1737 575132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1737 500 Gene3D - 17 103 - -
Hepe07g1737 500 PRINTS Aromatic-L-amino-acid decarboxylase signature 95 114 IPR010977 GO:0006520(InterPro)|GO:0016831(InterPro)
Hepe07g1737 500 PRINTS Aromatic-L-amino-acid decarboxylase signature 135 154 IPR010977 GO:0006520(InterPro)|GO:0016831(InterPro)
Hepe07g1737 500 PRINTS Aromatic-L-amino-acid decarboxylase signature 27 46 IPR010977 GO:0006520(InterPro)|GO:0016831(InterPro)
Hepe07g1737 500 PRINTS Aromatic-L-amino-acid decarboxylase signature 412 431 IPR010977 GO:0006520(InterPro)|GO:0016831(InterPro)
Hepe07g1737 500 PRINTS Aromatic-L-amino-acid decarboxylase signature 160 180 IPR010977 GO:0006520(InterPro)|GO:0016831(InterPro)
Hepe07g1737 500 PRINTS Aromatic-L-amino-acid decarboxylase signature 116 134 IPR010977 GO:0006520(InterPro)|GO:0016831(InterPro)
Hepe07g1737 500 PRINTS Aromatic-L-amino-acid decarboxylase signature 69 88 IPR010977 GO:0006520(InterPro)|GO:0016831(InterPro)
Hepe07g1737 500 PRINTS Aromatic-L-amino-acid decarboxylase signature 369 384 IPR010977 GO:0006520(InterPro)|GO:0016831(InterPro)
Hepe07g1737 500 PANTHER GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE 14 496 - GO:0005737(PANTHER)|GO:0016831(PANTHER)
Hepe07g1737 500 SUPERFAMILY PLP-dependent transferases 23 496 IPR015424 -
Hepe07g1737 500 FunFam Histidine decarboxylase 104 396 - -
Hepe07g1737 500 Pfam Pyridoxal-dependent decarboxylase conserved domain 56 430 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Hepe07g1737 500 Gene3D - 104 396 IPR015421 -
Hepe07g1737 500 CDD DOPA_deC_like 98 492 - -
Hepe07g1737 500 Gene3D Aspartate Aminotransferase, domain 1 397 500 IPR015422 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1737 K01593 - - csv:101207888 793.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1737 Hepe-Chr7:59539392 Hepe07g1739 Hepe-Chr7:59638764 1.47e-310 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g609 Blo04g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00096 . Chy12g01520 Cme12g01966 . . . Bda14g00865 . . Bma03g00842 . Sed08g2095 . . . . . . . . Bhi08g01127 Tan05g2408 Cmetu06g2174 . Hepe07g1737 . . Cla04g01176 Cam04g1233 Cec01g1744 Cco01g1790 Clacu04g1261 Cmu04g1240 Cre01g1534 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000779 6 2 3 5 4 2 3 2 2 1 2 2 3 2 2 3 2 7 3 3 2 2 3 5 4 3 2 3 7 3 93