Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1742 ATGAGGCTCTCTGCGGCTGGTTTTAGTCCTCAGGCTCCGGAAGGCGAGAGGAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCGGGTCCTCTTGTTTCTCTGCCGTCTGTTTGCAGTCGCGTTGTTTATTTTCCTCAAGGTCATAGCGAGCAGGTTACTGCATCTACCAATAAAGAGGCTGATGCCCAGATCCCGAATTATCCTAGTTTACCGGCGCAGCTCATCTGTCAACTTCACAACTTGACAATGCATGCAGATGCTGAGACAGATGAAGTATATGCTCAGATGACCCTGCAACCATTGAGTGCTCAAGAATTGAAGGAAGCATACCTTCCAGCCGAGTTGGGCACTCCAAGTAGGCAGCCAACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACTAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCAGAAAAAGTATTCCCTCCTTTGGACTTCTCCATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACCTACATGATAATGAGTGGAAATTTAGACATATATTTCGCGGCCAGCCCAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGCGCTAAAAGACTTGTTGCTGGTGATGCTGTACTTTTTATCTGGAATGAAAAGAACCAGTTACTCCTTGGAATCAGGCGTGCAAGTCGACCACAAACCGTGATGCCTTCATCTGTTTTGTCTAGTGATAGCATGCATTTAGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCTACCAACAGTCGGTTTACCATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGTACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCCGTCAAGGTTGGCTGGGACGAGTCAACAGCAGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATTGAACCATTGACAACATTTCCAATGTATCCATCACCGTTTCCACTTAGGCTGAAGCGACCATGGCCAACTGGACTGCCTTCTTTCGGCCTCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGCGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAACTGGGGTCTCACCATGGATGCAGCCGAGGCTTGATGCATCCATGATGGGTATGCAACCTGACATGTATCAAGCCATGGCTGCTGCAGCTCTTCAGGAGATGAGGACGGTTGATTATTCCAAAATAGCACCTGCTTCTGTTCTGCAATTCCAGCAGCCCCAAGGTCTTCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGCTGCATCAGTCTCAATCTCAGCAGGCGTTTCTACAATCCATTCATGAAAATCAGCAGCATTCTCAGTCTCAGTCGCAGGCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCGCAGCAGTCATTCAATAATCAACAACAGCAGCATCAACAGCAACCAAGGCAGCCACAGCCAATGGTTGATCATCATCAGATTTCTTGTTCGATCCCTGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTCACCGTCCCTACAAACCGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAACCCTGTAACTAGTCCTACTGTTTCTCCATTGCATAGCCTTGCCGGGTCATTTGTCCAAGATGAATCGTCTCAGATGCTTAACCTTCAAAGAGCAAATTCAATAATGCCTTCAGCTGGCGGCTGGCCATCAAAGAGAGCTGCTATTGACCCTCTCTCTACTGGAGCTTCTCAGTATTTTCTACCTCAAGTAGAAAACTTGGGAACATCACAGAGTAGTATTTCTCAGAATACAGTTGCATTGCCACCCTTCCCTGGAAGGGAGTGTTCTATTGATGATCGAGATGAGGGCTCTGATCCACAAAACCATGTTTTATTTGGTGTGAATATAGAGTCTTCATCCCTTCTAATGCACAATGGGATGTCAAATCTTAGGGGAGTCGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGGGCACTGCTGGTACCGATTTTTCTGTAAATCCAACGATGACGTCCTCAAATTGCATTGATGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACAGAACGGAACCTTTGTCAAGGTTCATAAATCGGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGTATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGAATGACGTTCTTCTTCTCGGTGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTGTGGTGTATCAAAATACTTTCACCAGATGAAGTTCAGGAAATGGGCAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTCTCAAACAGCACCTGTGACGACTATGGTAGCCGACAGGACTCAAGAAATTTAATTTCAGGGATAACCTCTGTAGGGCCTCTCGACTACTGA 2715 47.15 MRLSAAGFSPQAPEGERRVLNSELWHACAGPLVSLPSVCSRVVYFPQGHSEQVTASTNKEADAQIPNYPSLPAQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGLKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGTGVSPWMQPRLDASMMGMQPDMYQAMAAAALQEMRTVDYSKIAPASVLQFQQPQGLPCQSSTLMQPQMLHQSQSQQAFLQSIHENQQHSQSQSQAQTQSHHLQPQLQPQQSFNNQQQQHQQQPRQPQPMVDHHQISCSIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPLHSLAGSFVQDESSQMLNLQRANSIMPSAGGWPSKRAAIDPLSTGASQYFLPQVENLGTSQSSISQNTVALPPFPGRECSIDDRDEGSDPQNHVLFGVNIESSSLLMHNGMSNLRGVGNDSVSTTLPFSSNYMGTAGTDFSVNPTMTSSNCIDESGFLQSHENVGQVNPQNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPDEVQEMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGPLDY 904
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 59763079 59769688 + Hsped.07g17420.1 Hepe07g1742 575137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1742 904 ProSiteProfiles PB1 domain profile. 771 855 IPR053793 -
Hepe07g1742 904 FunFam Auxin response factor 291 363 - -
Hepe07g1742 904 Gene3D - 291 363 - -
Hepe07g1742 904 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677(InterPro)
Hepe07g1742 904 MobiDBLite consensus disorder prediction 575 594 - -
Hepe07g1742 904 CDD B3_DNA 126 227 IPR003340 GO:0003677(InterPro)
Hepe07g1742 904 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677(InterPro)
Hepe07g1742 904 FunFam Auxin response factor 766 860 - -
Hepe07g1742 904 MobiDBLite consensus disorder prediction 483 548 - -
Hepe07g1742 904 Gene3D - 768 860 - -
Hepe07g1742 904 SMART B3_2 127 229 IPR003340 GO:0003677(InterPro)
Hepe07g1742 904 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Hepe07g1742 904 SUPERFAMILY CAD & PB1 domains 761 846 - -
Hepe07g1742 904 Gene3D - 125 228 IPR015300 -
Hepe07g1742 904 Pfam Auxin response factor 253 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Hepe07g1742 904 FunFam Auxin response factor 125 229 - -
Hepe07g1742 904 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 862 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2436 Hepe-Chr2:70453552 Hepe07g1742 Hepe-Chr7:59763079 9.20e-314 dispersed
Hepe07g1742 Hepe-Chr7:59763079 Hepe09g0011 Hepe-Chr9:120331 2.27e-119 dispersed
Hepe01g1631 Hepe-Chr1:81546522 Hepe07g1742 Hepe-Chr7:59763079 3.52e-197 transposed
Hepe08g2070 Hepe-Chr8:58170051 Hepe07g1742 Hepe-Chr7:59763079 4.05e-185 transposed
Hepe08g2709 Hepe-Chr8:69072305 Hepe07g1742 Hepe-Chr7:59763079 3.77e-193 transposed
Hepe04g2022 Hepe-Chr4:75005464 Hepe07g1742 Hepe-Chr7:59763079 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55990 PF02362 B3 5.80E-21 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1742 K14486 - csv:101211705 1608.96