Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1747 ATGGACGGCGGCGCTGGGAGGTTGAAGGCGTCGAGTTCGACCAATGGTGGTAGAACCCGGGTGGGAAAATACGAGCTGGGTAAAACCCTAGGTGAGGGCAACTTCGCTAAGGTCAAGTTTGCTCGGAACTCGGAGACCGGCGATAACGTGGCGATCAAAATTCTTGACAAGGAGAAAGTTCTTAAGCACAAGATGATCGGTCAGATTAAACGTGAGATATCGACAATGAAACTAATTAGGCATCCAAATGTCATCCGTATGATTGAGGTGATGGCTAGCAAGTCCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGACAAGATTGTTAGTATAGGCAGGCTGAAGGAAGATGAAGCAAGAAAGTATTTTCAGCAGCTTATTAATGCGGTCGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGACCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCCTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTACCTCAGCAAGTTCGGGAAGATGGATTACTCCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATAACAAAGGCTATGATGGGGCGAAAGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATTTACCATTTGAAGATTCCAACCTGGCTGCGTTGTATAAGAAGATACACAAGGCTGATTTCACTTGTCCACCATGGTTCTCTACAAATGCAAAGAAACTAATCAAAAGAATTTTGGATCCCAATCCCTCAACGAGAATTACCATTCCAGAGGTCATTGAAAATGAATGGTTTAGAAAAGGTTATAAGCCGCCCACTTTTGAACAAGCTGATATTAGTCTTGATGATGTAGATGCTATCTTCGGTGAAACAGTGGATTCGGGTTGTCTCGTTGTGGAAAGGAAAGAGGATGGATCTACTGCCCCTCTTCCGATGAATGCATTCGAGCTCATCTCTAAATCTCAAGGCCTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGCTTGTTAAACGGGAAACAAGGTTCACATCCAATCGACCTGCGAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAACACCTTTGGGTTTTGGTGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGCCGTAAAGGCCACTTATCAGTTGCAACAGAGATTTATGAAGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGGGATACATTAGAATTTCACAAGTTTTATAAGAGTCTCAAGACCGGGCTGAAAGACATTGTCTGGAAACATGAAGAGGATGCAGATAAAGATAACGTTGCAGGTGCAGGTGCAAGTGTCTCGCGGCCGAAGTAA 1404 43.09 MDGGAGRLKASSSTNGGRTRVGKYELGKTLGEGNFAKVKFARNSETGDNVAIKILDKEKVLKHKMIGQIKREISTMKLIRHPNVIRMIEVMASKSKIYIVLEFVTGGELFDKIVSIGRLKEDEARKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGLLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLAALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFGETVDSGCLVVERKEDGSTAPLPMNAFELISKSQGLNLSSLFEKQMGLVKRETRFTSNRPAKEILSKIEETATPLGFGVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKSLKTGLKDIVWKHEEDADKDNVAGAGASVSRPK 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 59864705 59871601 - Hsped.07g17470.1 Hepe07g1747 575142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1747 467 CDD STKc_SnRK3 23 278 - -
Hepe07g1747 467 CDD CIPK_C 327 442 - -
Hepe07g1747 467 FunFam Non-specific serine/threonine protein kinase 17 320 - -
Hepe07g1747 467 Gene3D Transferase(Phosphotransferase) domain 1 17 321 - -
Hepe07g1747 467 MobiDBLite consensus disorder prediction 1 21 - -
Hepe07g1747 467 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1747 467 Pfam NAF domain 323 383 IPR004041 GO:0007165(InterPro)
Hepe07g1747 467 Gene3D Kinase associated domain 1, KA1 322 446 - -
Hepe07g1747 467 SUPERFAMILY Protein kinase-like (PK-like) 21 290 IPR011009 -
Hepe07g1747 467 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1747 467 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 15 434 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe07g1747 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe07g1747 467 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165(InterPro)
Hepe07g1747 467 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1747 467 FunFam Non-specific serine/threonine protein kinase 15 103 - -
Hepe07g1747 467 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
Hepe07g1747 467 FunFam Non-specific serine/threonine protein kinase 320 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0008 Hepe-Chr3:112109 Hepe07g1747 Hepe-Chr7:59864705 5.18e-130 dispersed
Hepe03g0445 Hepe-Chr3:6716682 Hepe07g1747 Hepe-Chr7:59864705 9.91e-83 dispersed
Hepe05g1338 Hepe-Chr5:61764598 Hepe07g1747 Hepe-Chr7:59864705 2.99e-147 dispersed
Hepe05g1888 Hepe-Chr5:69213636 Hepe07g1747 Hepe-Chr7:59864705 4.85e-57 dispersed
Hepe07g1747 Hepe-Chr7:59864705 Hepe08g0038 Hepe-Chr8:288362 5.30e-220 dispersed
Hepe05g2063 Hepe-Chr5:71115157 Hepe07g1747 Hepe-Chr7:59864705 2.93e-167 transposed
Hepe04g2016 Hepe-Chr4:74943686 Hepe07g1747 Hepe-Chr7:59864705 1.28e-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72960 PF00069 Pkinase 3.90E-74 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1747 - - - 0.0