Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1806 ATGGAGAAGAAACGGAGCGGCGGTGAAAGAGGTACGACGGCTTTTTCTTCATCGGGGGATAGAAATACGAGGGCTAGCACCTATAACAGAGTTGCGACACTTGTGCAATACAATGCCGACGCTGGACTTTTGAACAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAACTATTCAAGGTCAGTTCTTGAAGCTCCTCTATCCGTACCCGACGAACAAATTTCTTCCTATTTGTCTAGGATTCAGAGGGGTGGGCTGGTTCAATCCTTTGGTTGTTTGCTTGCGATTGAGGCATCTAGTTTTAGGATTATTAGCTATAGTGAGAATTGTTATGAATTATTGGGGCTGAATGTTCAGTTTGAGTTGGCACAGGGGAAGGGTTTGATTGGGGTTGATTTGAGAGTTCTGTTTACGCCTTCCTCTGGCCCTTCTTTGGCGAAAGCGGTTTCCTCCAGGGAGATGTCGATGTTGAATCCTGTTTGGGTCTATTCTAGGGCTACCCAGAAGCCATTTTATGCTATACTGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCACAGTCTGTTGATCCTGCATTGTCCCTTGCTGGGGCCGTGCAGTCGCAGAAACTCGCGGTTCGGGCGATTTCCAGGTTGCAGGCTCTTGCGGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAAGATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGCCTTAGAGCCATACCTCGGTTTGCATTATCCTTCTATTGATATACCTCAAGCTGCTCGTTTTTTGTTCAAGAAGAACCGTGTCAGGATGATTTGTGATTGCCGGACGAAGCCCGTGAGGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTCTTTGGTGAATTCAACACTTCGATCACCACATGGCTGTCATTTGCAGTACATGGCAAATATGAGTTCCTTAGCCTCATTAGCGATGGCAATAATCATGAACAATGATGACTCGCCAACAAGGTTATGGGGCCTGGTAGTATGCCACCATACTTCTCCGCGATATGTCCCTTTCCCACTTCGTTACGCTTGCGAATTTCTCATGCAGGCGTTCGGGGTGCAGCTTTACATGGAGCTTCAATTAGCATTACAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTCCGAGGCTCCCCACATGCATTGCTGAGTCAGTCTCCTAGTATAATGGATCTTGTCAAGTGTGATGGTGCTGCATTGTACTATAACGGGGCATGTTATTTACTAGGTGTAACTCCAACTGAAGCCCAAGTCAAAGACCTTGCAGAATGGGTACTCAATAACCATGGGGATTCTACGGGACTGAGCACGGATAGTTTGGCTGATGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGTGGTCTGGCAGCTGCAAGAATTAGTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGTTGCAAAGGAAATCCAATGGGGAGGAGCCAAGCATCATCCGAGTGATATGGATGATGGTGGAAGAATGCACCCGAGATCATCATTTAACGCGTTTCTTGAAGTTGCTAAGAGTAAAAGTATGTCTTGGGAAGTTACAGAAATAAATGTCATTCACTCATTGCAGCTTATTATGAGGGAGTATTTTTCGAGCACTAGGGACAGTGATTCAAAGGCAGAAATTTCTGTCCAGCAGAGTGATACTGAGGTCCAGGATATCAACGAACTCGGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACTGTTCCAATTTTTGGGATTGACTCGACTGGTGTGATCAATGGATGGAATGCTAAAATTTCTGAACTCGTTGGATTACAAACTAGTGAAGCTATGGGGAAATCTCTGGTTAAAGAAATTGTTCATGAAGATTCACGTGGAACTGTTGGAGATTTACTTTTTCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTGGAACGGATAAAGGGAAGTCTACTGTGTATATTGTAGTTAATGCTTGTGCAAGTAGGGATTGTACAGACAAAGTTGTTGGGGTTTGCTTTGTTGGGCAAGATGTTACATCAGAGAAAGGTGTGATGGACAAATTTATCCGTCTGCAGGGAAATTACAAGACAATTATTGATAGTCTGAGTCCATTGATTCCACCAATATTTGTTTCGGACGAGAATGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAACTTTCTGGTTGGAGGAAAGATGAAGTTATAGGAAAAATGCTAGCAGGGGAGATCTTTGGGAATTTATGTAGGTTGAAAGGTCTGGATACCCTCACTAGGTTTATGATCCTATTATATCAAGGTATGGGTGGTGAAGAAACCGAGAAGTTTCCATTAGAATTTTTCGATAAGGATGGGAACTATGTGGAGGTGCTTTTAACATCAAACAAGAGAACTGATGCAGAAGGAAATGTTGTTGGTTGTATCTGCTTCCTGCAAATTGTTGAGCCCAACTTGCAAGGGATCTCTGAAAGACTTGAGCTGGGCGACAGAGAGGGCAATTTGCAGTTCAAGGAGTTGTGTTACATAAAGCAGGAGATGAAAAATCCTTTAAATGGCATCAGATTTACTCATGAACTCCTTGTAAATTCTGGCATTACGGAAAACCAGAAACTCTTCCTCGATACTAGTGATGCATGCGAGAGACAAATCACGACAATCATTGAGGATATGTACTTCAGAAGTTTAGAAGGAGGCCAAGTTGAAATAAACAGAGAGGAATTTGTCCTCGGGAGTGTTCTGGACGCCATTATCTGTCAAATCATGACTATTGTCAGAGAGAAGAACATACAACTTTTTCATGAAATTCCAGAAGAAATCAAAATTTTAACTCTTTGTGGCGATCAAATTAAGCTTCAGCTGGTTTTGTCAGATTTCTTACTTAACATAGTGCAGTATGCGCCTGTTCTGGACGGTTGGGTTGAAATCAAAATTTCGGCTGGTTTGAAGCTTATACAAGATGGGAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCACAGCAAGGCCTCGCCCTTAACCTGTCACGTAGACTTCTCAATAAATTGAACGGTAACGTTCGCTACGTTAGAGAGCAAACTCAATGCTACTTCCTCATCGATCTTGAACTCAAGTTAAAGCGCTCGAGGGGGTCAATGGAAGCTTCTACAAGCCAAAAGACTTGA 3378 43.22 MEKKRSGGERGTTAFSSSGDRNTRASTYNRVATLVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPLSVPDEQISSYLSRIQRGGLVQSFGCLLAIEASSFRIISYSENCYELLGLNVQFELAQGKGLIGVDLRVLFTPSSGPSLAKAVSSREMSMLNPVWVYSRATQKPFYAILHRIDVGIVIDLEPAQSVDPALSLAGAVQSQKLAVRAISRLQALAGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSALEPYLGLHYPSIDIPQAARFLFKKNRVRMICDCRTKPVRVIQSDELKQPLSLVNSTLRSPHGCHLQYMANMSSLASLAMAIIMNNDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGVQLYMELQLALQLTEKKVLKTQTLLCDMLLRGSPHALLSQSPSIMDLVKCDGAALYYNGACYLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGLAAARISSKDFLFWFRSHVAKEIQWGGAKHHPSDMDDGGRMHPRSSFNAFLEVAKSKSMSWEVTEINVIHSLQLIMREYFSSTRDSDSKAEISVQQSDTEVQDINELGSVACEMVRLIETATVPIFGIDSTGVINGWNAKISELVGLQTSEAMGKSLVKEIVHEDSRGTVGDLLFHALQGKEDKNVELKLRSFGTDKGKSTVYIVVNACASRDCTDKVVGVCFVGQDVTSEKGVMDKFIRLQGNYKTIIDSLSPLIPPIFVSDENGYCCEWTAAMEKLSGWRKDEVIGKMLAGEIFGNLCRLKGLDTLTRFMILLYQGMGGEETEKFPLEFFDKDGNYVEVLLTSNKRTDAEGNVVGCICFLQIVEPNLQGISERLELGDREGNLQFKELCYIKQEMKNPLNGIRFTHELLVNSGITENQKLFLDTSDACERQITTIIEDMYFRSLEGGQVEINREEFVLGSVLDAIICQIMTIVREKNIQLFHEIPEEIKILTLCGDQIKLQLVLSDFLLNIVQYAPVLDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWTSQQGLALNLSRRLLNKLNGNVRYVREQTQCYFLIDLELKLKRSRGSMEASTSQKT 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 60786622 60811535 + Hsped.07g18060.1 Hepe07g1806 575201

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1806 1125 SUPERFAMILY GAF domain-like 203 390 - -
Hepe07g1806 1125 CDD HATPase_Phy-like 996 1108 IPR044767 -
Hepe07g1806 1125 Gene3D - 399 572 IPR043150 -
Hepe07g1806 1125 SMART gaf_1 223 404 IPR003018 GO:0005515(InterPro)
Hepe07g1806 1125 CDD HisKA 891 940 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe07g1806 1125 NCBIfam PAS domain S-box protein 616 731 IPR000014 -
Hepe07g1806 1125 NCBIfam PAS domain S-box protein 757 861 IPR000014 -
Hepe07g1806 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 757 859 IPR035965 -
Hepe07g1806 1125 Gene3D PAS domain 610 731 - -
Hepe07g1806 1125 Gene3D PAS domain 81 326 - -
Hepe07g1806 1125 SMART HisKA_10 884 948 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe07g1806 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 949 1106 IPR036890 -
Hepe07g1806 1125 FunFam Phytochrome 605 737 - -
Hepe07g1806 1125 FunFam Phytochrome 756 864 - -
Hepe07g1806 1125 ProSiteProfiles PAS repeat profile. 743 795 IPR000014 -
Hepe07g1806 1125 ProSiteProfiles PAC domain profile. 683 739 IPR000700 -
Hepe07g1806 1125 Pfam GAF domain 224 390 IPR003018 GO:0005515(InterPro)
Hepe07g1806 1125 FunFam Phytochrome 399 531 - -
Hepe07g1806 1125 Gene3D PAS domain 756 867 - -
Hepe07g1806 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Hepe07g1806 1125 ProSiteProfiles PAS repeat profile. 609 680 IPR000014 -
Hepe07g1806 1125 PIRSF Phytochrome_conventional 9 1118 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Hepe07g1806 1125 Pfam Phytochrome region 407 581 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 Pfam PAS fold 78 190 IPR013654 GO:0006355(InterPro)
Hepe07g1806 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 384 IPR016132 -
Hepe07g1806 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 615 723 IPR035965 -
Hepe07g1806 1125 Pfam His Kinase A (phospho-acceptor) domain 889 946 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe07g1806 1125 SMART HKATPase_4 996 1108 IPR003594 -
Hepe07g1806 1125 SUPERFAMILY GAF domain-like 402 580 - -
Hepe07g1806 1125 PANTHER OS08G0260000 PROTEIN 22 988 - -
Hepe07g1806 1125 CDD PAS 754 862 IPR000014 -
Hepe07g1806 1125 ProSiteProfiles Histidine kinase domain profile. 891 1110 IPR005467 -
Hepe07g1806 1125 Gene3D - 204 555 IPR029016 -
Hepe07g1806 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 191 IPR035965 -
Hepe07g1806 1125 Gene3D - 926 1102 IPR036890 -
Hepe07g1806 1125 MobiDBLite consensus disorder prediction 1 22 - -
Hepe07g1806 1125 CDD PAS 620 727 IPR000014 -
Hepe07g1806 1125 SMART pas_2 611 678 IPR000014 -
Hepe07g1806 1125 SMART pas_2 742 812 IPR000014 -
Hepe07g1806 1125 PRINTS Phytochrome signature 631 646 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 725 745 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 612 628 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 705 722 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 424 444 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 509 528 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 542 560 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 996 1104 IPR003594 -
Hepe07g1806 1125 Pfam PAS fold 743 862 IPR013767 GO:0006355(InterPro)
Hepe07g1806 1125 Pfam PAS fold 612 727 IPR013767 GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1806 K12123 - - csv:101214900 1907.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1374 Hepe-Chr5:62514273 Hepe07g1806 Hepe-Chr7:60786622 0.0 dispersed
Hepe07g1806 Hepe-Chr7:60786622 Hepe08g1559 Hepe-Chr8:21302735 0.0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0917 . 5 1197 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1455.7
Hepe01g0254 . 21 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1343.9
Hepe02g2600 . 24 984 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1326.6
Hepe02g0293 . 279 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.6e-276 948.7
Hepe03g1107 . 59 1008 Histidine Kinase Gene Family AT2G01830 53.0 3.2e-274 941.8
Hepe08g0395 . 304 1262 Histidine Kinase Gene Family AT2G01830 52.5 4.3e-271 931.4
Hepe01g1937 . 1 996 Histidine Kinase Gene Family AT5G10720 58.3 2.2e-295 1011.9
Hepe08g1559 . 1 1119 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1818.5
Hepe08g1551 . 19 1160 Histidine Kinase Gene Family AT1G09570 70.8 0.0e+00 1615.9
Hepe02g0311 . 18 1110 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1206.4
Hepe05g1374 . 45 1130 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1187.6
Hepe05g1374 . 41 1071 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1657.1
Hepe07g1806 . 24 1046 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1219.1
Hepe02g0311 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.8 0.0e+00 1077.4
Hepe08g1559 . 21 1054 Histidine Kinase Gene Family AT2G18790 52.3 5.4e-312 1067.4
Hepe08g1551 . 45 1094 Histidine Kinase Gene Family AT2G18790 50.3 5.6e-301 1030.8
Hepe02g0311 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1362.8
Hepe05g1374 . 45 1132 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1137.5
Hepe08g1559 . 9 1113 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.0
Hepe05g1374 . 41 1132 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1699.5
Hepe07g1806 . 36 1108 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1255.7
Hepe02g0311 . 26 1113 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1114.8
Hepe08g1559 . 8 1114 Histidine Kinase Gene Family AT4G16250 51.8 0.0e+00 1113.2
Hepe07g1806 . 36 1124 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1346.6
Hepe05g1374 . 49 1141 Histidine Kinase Gene Family AT4G18130 58.3 0.0e+00 1263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34