Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1806 ATGGAGAAGAAACGGAGCGGCGGTGAAAGAGGTACGACGGCTTTTTCTTCATCGGGGGATAGAAATACGAGGGCTAGCACCTATAACAGAGTTGCGACACTTGTGCAATACAATGCCGACGCTGGACTTTTGAACAAGTTTGAGCAATCGGATGCCTCTGGTGAGTCTTTTAACTATTCAAGGTCAGTTCTTGAAGCTCCTCTATCCGTACCCGACGAACAAATTTCTTCCTATTTGTCTAGGATTCAGAGGGGTGGGCTGGTTCAATCCTTTGGTTGTTTGCTTGCGATTGAGGCATCTAGTTTTAGGATTATTAGCTATAGTGAGAATTGTTATGAATTATTGGGGCTGAATGTTCAGTTTGAGTTGGCACAGGGGAAGGGTTTGATTGGGGTTGATTTGAGAGTTCTGTTTACGCCTTCCTCTGGCCCTTCTTTGGCGAAAGCGGTTTCCTCCAGGGAGATGTCGATGTTGAATCCTGTTTGGGTCTATTCTAGGGCTACCCAGAAGCCATTTTATGCTATACTGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCACAGTCTGTTGATCCTGCATTGTCCCTTGCTGGGGCCGTGCAGTCGCAGAAACTCGCGGTTCGGGCGATTTCCAGGTTGCAGGCTCTTGCGGGTGGTGATATTGGTGTTTTATGTGATACGGTTGTGGAAGATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGATGATGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGCCTTAGAGCCATACCTCGGTTTGCATTATCCTTCTATTGATATACCTCAAGCTGCTCGTTTTTTGTTCAAGAAGAACCGTGTCAGGATGATTTGTGATTGCCGGACGAAGCCCGTGAGGGTCATTCAAAGTGATGAGCTAAAGCAGCCTCTTTCTTTGGTGAATTCAACACTTCGATCACCACATGGCTGTCATTTGCAGTACATGGCAAATATGAGTTCCTTAGCCTCATTAGCGATGGCAATAATCATGAACAATGATGACTCGCCAACAAGGTTATGGGGCCTGGTAGTATGCCACCATACTTCTCCGCGATATGTCCCTTTCCCACTTCGTTACGCTTGCGAATTTCTCATGCAGGCGTTCGGGGTGCAGCTTTACATGGAGCTTCAATTAGCATTACAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTCCGAGGCTCCCCACATGCATTGCTGAGTCAGTCTCCTAGTATAATGGATCTTGTCAAGTGTGATGGTGCTGCATTGTACTATAACGGGGCATGTTATTTACTAGGTGTAACTCCAACTGAAGCCCAAGTCAAAGACCTTGCAGAATGGGTACTCAATAACCATGGGGATTCTACGGGACTGAGCACGGATAGTTTGGCTGATGCTGGCTACCCTGAAGCTGCTTCACTAGGTGATGCAGTGTGTGGTCTGGCAGCTGCAAGAATTAGTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGTTGCAAAGGAAATCCAATGGGGAGGAGCCAAGCATCATCCGAGTGATATGGATGATGGTGGAAGAATGCACCCGAGATCATCATTTAACGCGTTTCTTGAAGTTGCTAAGAGTAAAAGTATGTCTTGGGAAGTTACAGAAATAAATGTCATTCACTCATTGCAGCTTATTATGAGGGAGTATTTTTCGAGCACTAGGGACAGTGATTCAAAGGCAGAAATTTCTGTCCAGCAGAGTGATACTGAGGTCCAGGATATCAACGAACTCGGTTCAGTAGCTTGTGAAATGGTTAGGTTGATTGAAACAGCAACTGTTCCAATTTTTGGGATTGACTCGACTGGTGTGATCAATGGATGGAATGCTAAAATTTCTGAACTCGTTGGATTACAAACTAGTGAAGCTATGGGGAAATCTCTGGTTAAAGAAATTGTTCATGAAGATTCACGTGGAACTGTTGGAGATTTACTTTTTCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTAAAACTGAGAAGTTTTGGAACGGATAAAGGGAAGTCTACTGTGTATATTGTAGTTAATGCTTGTGCAAGTAGGGATTGTACAGACAAAGTTGTTGGGGTTTGCTTTGTTGGGCAAGATGTTACATCAGAGAAAGGTGTGATGGACAAATTTATCCGTCTGCAGGGAAATTACAAGACAATTATTGATAGTCTGAGTCCATTGATTCCACCAATATTTGTTTCGGACGAGAATGGTTACTGCTGTGAATGGACTGCAGCCATGGAAAAACTTTCTGGTTGGAGGAAAGATGAAGTTATAGGAAAAATGCTAGCAGGGGAGATCTTTGGGAATTTATGTAGGTTGAAAGGTCTGGATACCCTCACTAGGTTTATGATCCTATTATATCAAGGTATGGGTGGTGAAGAAACCGAGAAGTTTCCATTAGAATTTTTCGATAAGGATGGGAACTATGTGGAGGTGCTTTTAACATCAAACAAGAGAACTGATGCAGAAGGAAATGTTGTTGGTTGTATCTGCTTCCTGCAAATTGTTGAGCCCAACTTGCAAGGGATCTCTGAAAGACTTGAGCTGGGCGACAGAGAGGGCAATTTGCAGTTCAAGGAGTTGTGTTACATAAAGCAGGAGATGAAAAATCCTTTAAATGGCATCAGATTTACTCATGAACTCCTTGTAAATTCTGGCATTACGGAAAACCAGAAACTCTTCCTCGATACTAGTGATGCATGCGAGAGACAAATCACGACAATCATTGAGGATATGTACTTCAGAAGTTTAGAAGGAGGCCAAGTTGAAATAAACAGAGAGGAATTTGTCCTCGGGAGTGTTCTGGACGCCATTATCTGTCAAATCATGACTATTGTCAGAGAGAAGAACATACAACTTTTTCATGAAATTCCAGAAGAAATCAAAATTTTAACTCTTTGTGGCGATCAAATTAAGCTTCAGCTGGTTTTGTCAGATTTCTTACTTAACATAGTGCAGTATGCGCCTGTTCTGGACGGTTGGGTTGAAATCAAAATTTCGGCTGGTTTGAAGCTTATACAAGATGGGAATGAACATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCACAGCAAGGCCTCGCCCTTAACCTGTCACGTAGACTTCTCAATAAATTGAACGGTAACGTTCGCTACGTTAGAGAGCAAACTCAATGCTACTTCCTCATCGATCTTGAACTCAAGTTAAAGCGCTCGAGGGGGTCAATGGAAGCTTCTACAAGCCAAAAGACTTGA 3378 43.22 MEKKRSGGERGTTAFSSSGDRNTRASTYNRVATLVQYNADAGLLNKFEQSDASGESFNYSRSVLEAPLSVPDEQISSYLSRIQRGGLVQSFGCLLAIEASSFRIISYSENCYELLGLNVQFELAQGKGLIGVDLRVLFTPSSGPSLAKAVSSREMSMLNPVWVYSRATQKPFYAILHRIDVGIVIDLEPAQSVDPALSLAGAVQSQKLAVRAISRLQALAGGDIGVLCDTVVEDVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSALEPYLGLHYPSIDIPQAARFLFKKNRVRMICDCRTKPVRVIQSDELKQPLSLVNSTLRSPHGCHLQYMANMSSLASLAMAIIMNNDDSPTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGVQLYMELQLALQLTEKKVLKTQTLLCDMLLRGSPHALLSQSPSIMDLVKCDGAALYYNGACYLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGLAAARISSKDFLFWFRSHVAKEIQWGGAKHHPSDMDDGGRMHPRSSFNAFLEVAKSKSMSWEVTEINVIHSLQLIMREYFSSTRDSDSKAEISVQQSDTEVQDINELGSVACEMVRLIETATVPIFGIDSTGVINGWNAKISELVGLQTSEAMGKSLVKEIVHEDSRGTVGDLLFHALQGKEDKNVELKLRSFGTDKGKSTVYIVVNACASRDCTDKVVGVCFVGQDVTSEKGVMDKFIRLQGNYKTIIDSLSPLIPPIFVSDENGYCCEWTAAMEKLSGWRKDEVIGKMLAGEIFGNLCRLKGLDTLTRFMILLYQGMGGEETEKFPLEFFDKDGNYVEVLLTSNKRTDAEGNVVGCICFLQIVEPNLQGISERLELGDREGNLQFKELCYIKQEMKNPLNGIRFTHELLVNSGITENQKLFLDTSDACERQITTIIEDMYFRSLEGGQVEINREEFVLGSVLDAIICQIMTIVREKNIQLFHEIPEEIKILTLCGDQIKLQLVLSDFLLNIVQYAPVLDGWVEIKISAGLKLIQDGNEHIHLQIRMSHPGQGLPPELIQDMVGGGQQWTSQQGLALNLSRRLLNKLNGNVRYVREQTQCYFLIDLELKLKRSRGSMEASTSQKT 1125
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 60786622 60811535 + Hsped.07g18060.1 Hepe07g1806 575201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1806 1125 SUPERFAMILY GAF domain-like 203 390 - -
Hepe07g1806 1125 CDD HATPase_Phy-like 996 1108 IPR044767 -
Hepe07g1806 1125 Gene3D - 399 572 IPR043150 -
Hepe07g1806 1125 SMART gaf_1 223 404 IPR003018 GO:0005515(InterPro)
Hepe07g1806 1125 CDD HisKA 891 940 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe07g1806 1125 NCBIfam PAS domain S-box protein 616 731 IPR000014 -
Hepe07g1806 1125 NCBIfam PAS domain S-box protein 757 861 IPR000014 -
Hepe07g1806 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 757 859 IPR035965 -
Hepe07g1806 1125 Gene3D PAS domain 610 731 - -
Hepe07g1806 1125 Gene3D PAS domain 81 326 - -
Hepe07g1806 1125 SMART HisKA_10 884 948 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe07g1806 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 949 1106 IPR036890 -
Hepe07g1806 1125 FunFam Phytochrome 605 737 - -
Hepe07g1806 1125 FunFam Phytochrome 756 864 - -
Hepe07g1806 1125 ProSiteProfiles PAS repeat profile. 743 795 IPR000014 -
Hepe07g1806 1125 ProSiteProfiles PAC domain profile. 683 739 IPR000700 -
Hepe07g1806 1125 Pfam GAF domain 224 390 IPR003018 GO:0005515(InterPro)
Hepe07g1806 1125 FunFam Phytochrome 399 531 - -
Hepe07g1806 1125 Gene3D PAS domain 756 867 - -
Hepe07g1806 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Hepe07g1806 1125 ProSiteProfiles PAS repeat profile. 609 680 IPR000014 -
Hepe07g1806 1125 PIRSF Phytochrome_conventional 9 1118 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Hepe07g1806 1125 Pfam Phytochrome region 407 581 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 Pfam PAS fold 78 190 IPR013654 GO:0006355(InterPro)
Hepe07g1806 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 384 IPR016132 -
Hepe07g1806 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 615 723 IPR035965 -
Hepe07g1806 1125 Pfam His Kinase A (phospho-acceptor) domain 889 946 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe07g1806 1125 SMART HKATPase_4 996 1108 IPR003594 -
Hepe07g1806 1125 SUPERFAMILY GAF domain-like 402 580 - -
Hepe07g1806 1125 PANTHER OS08G0260000 PROTEIN 22 988 - -
Hepe07g1806 1125 CDD PAS 754 862 IPR000014 -
Hepe07g1806 1125 ProSiteProfiles Histidine kinase domain profile. 891 1110 IPR005467 -
Hepe07g1806 1125 Gene3D - 204 555 IPR029016 -
Hepe07g1806 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 191 IPR035965 -
Hepe07g1806 1125 Gene3D - 926 1102 IPR036890 -
Hepe07g1806 1125 MobiDBLite consensus disorder prediction 1 22 - -
Hepe07g1806 1125 CDD PAS 620 727 IPR000014 -
Hepe07g1806 1125 SMART pas_2 611 678 IPR000014 -
Hepe07g1806 1125 SMART pas_2 742 812 IPR000014 -
Hepe07g1806 1125 PRINTS Phytochrome signature 631 646 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 725 745 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 612 628 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 705 722 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 424 444 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 509 528 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 PRINTS Phytochrome signature 542 560 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe07g1806 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 996 1104 IPR003594 -
Hepe07g1806 1125 Pfam PAS fold 743 862 IPR013767 GO:0006355(InterPro)
Hepe07g1806 1125 Pfam PAS fold 612 727 IPR013767 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe05g1374 Hepe-Chr5:62514273 Hepe07g1806 Hepe-Chr7:60786622 0.0 dispersed
Hepe07g1806 Hepe-Chr7:60786622 Hepe08g1559 Hepe-Chr8:21302735 0.0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1806 K12123 - csv:101214900 1907.49