Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1821 ATGATGGGTTACCCAGATGATGATCAGAATGAAGAATCTGCAGGTGCAGAAAGAAGAACAGGAAGAGGGAAGATCGAAATCAAGAGGATTGAAAACACAACAAATCGACAAGTAACTTTTTGTAAAAGGAGAAATGGATTGCTTAAGAAGGCTTATGAGCTTTCTGTTCTTTGCGATGCTGAGCTTGCTCTTCTTGTCTTCTCCACCCGTGGTCGTCTCTATGAATATGCCAATAACAGTGTTAAGGGTACGATTTCGAGGTACAAAAAGGCTTGTTCCGATCCCTCCACCGTCGGATCGGTTTCTGAAGCCAATACTCAGTTCTACCAGCAAGAATCTGCCAAATTACGAGCTCAAATCGGGAATATGCAAAACCTAAACAGGAATTTGTTGGGAGATTCGATAAGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGGAGGTGAAACTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTGCGGAGATTGAGTACATGAACAAAAGGGTATGCAATTTTCTTCTTCACTTCTACTACTTTACTCATTTTAAACCTACAAATAATGAAAAACCAAATTACTTAAATATATATAATTTTAAATTTGGTCCCTATAGTTTGGATTTAGTTGCTCGTGATTTTTTTGAAAGCTTTTATTTAGTCCCTATGCTTTGGGATTAG 696 38.65 MMGYPDDDQNEESAGAERRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAELALLVFSTRGRLYEYANNSVKGTISRYKKACSDPSTVGSVSEANTQFYQQESAKLRAQIGNMQNLNRNLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMNKRVCNFLLHFYYFTHFKPTNNEKPNYLNIYNFKFGPYSLDLVARDFFESFYLVPMLWD 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 60982597 60989748 - Hsped.07g18210.1 Hepe07g1821 575216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1821 231 SMART madsneu2 20 79 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 FunFam agamous-like MADS-box protein AGL11 32 115 - -
Hepe07g1821 231 Pfam K-box region 103 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g1821 231 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 Gene3D - 32 127 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 SUPERFAMILY SRF-like 21 94 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 MobiDBLite consensus disorder prediction 1 24 - -
Hepe07g1821 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 171 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g1821 231 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g1821 231 CDD MADS_MEF2_like 21 94 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe07g1821 231 Coils Coil 109 129 - -
Hepe07g1821 231 ProSiteProfiles K-box domain profile. 106 195 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0424 Hepe-Chr6:16017813 Hepe07g1821 Hepe-Chr7:60982597 3.41e-18 dispersed
Hepe07g1821 Hepe-Chr7:60982597 Hepe08g0613 Hepe-Chr8:5370745 4.13e-75 dispersed
Hepe04g1949 Hepe-Chr4:74374283 Hepe07g1821 Hepe-Chr7:60982597 8.14e-81 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55996 PF01486 K-box 3.40E-22 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1821 K09264 - csv:101205366 283.108