Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1836 ATGGCTGCTGCTGCCATTTTCTCGTCTTTACGAAGAAGGAGATCGCCGTCGCTGGAGGCTTTTTTGGCCCCCGTTGACCTCTCCGATGTCTCCTTACTTGAAACCTTAGCGATAGTTGCGACGGAGATCGTTTCGAGATTTTCGGAGAAGTCCTTCTTCTTCCAGCGAAGGAATTCTCGATCTCTGATAAGGAAACTGGAGGTTTGTCTTGTATTTTTGGACTTTTTGAAGGAATCGGATGCGATTTTGCCTCATACGGCGCTGCTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTACTGCTCCGAATCGAGTAAGTTGTGGATGTTGCTTCAGAACCACTCGATTTCGGGGCATTTTAATGATTTGAATTTGGAGTTGTTGACATTTTTGGATGTTTTTCCTCTTGAGGAAGTTGAATTGGGGGTGGATGTTAGAGAGCAGGTTCAGCTCTTGCAGAAGCAGTTGAGAAGGACGAGGATGTTTGTCGATGAACGCGATGAGGCGTTGAGGAGTCGTTTCCTTTCGTTTCTTGACTTGTTTGAGAACGGGAGGCTTCCCAATCCGAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTCGGAATGCGAAGAGTTGTAGAGATGAAATCGAGTTTTTGGAGGAGCAGATTGTCAATCATGAGGGCGATGTTGAGCCCCCGGTAGCGGTTTTAAATGGTTTTGTTGCTTTTACTAGATATAGCAGGTTTTTCCTCTTTGGATTTGAGGAAGATGAAGTTGAAACAGGAGCAGCAAACCAGAAGAAGCTGAAGAAGAACTTGATTACTCAGGAGATTGCCGAGACGTTTTTAACGATTCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAATGATCCAGTGATCATTTCTACAGGTCAGACATATGATCGCAGTTCAATTACTAGATGGATGGAAGAAGGACACAGCACTTGCCCAAAGACGGGGCAAATGCTCGTCCATACCCGCCTCGCTCCCAACCGCGCGTTAAGGAATTTGATCATGCAATGGTGCATTGCCCATGGAATTCCTTATGATCCTCCAGAAGGGATGGATGCATCTGCAGAAAGTTATGCAATGGCTTCCCCCACACGAGCTGCACTAGAAGCCAACAGAGCAACAGCTATGATCCTTATTCAACAGTTATCAATTGGATCGCAAGATGCGAAGACGATTGCTGCCCGTGAGATTCGTTTGTTGGCCAAAACAGGGAAAGAGAACCGTGCTTTCATCGCAGAAGCCGGTGCCGTCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACCCAGTTGCACAGGAGAATTCTGTGACTGCTATGCTTAACCTCTCAATATATGACAAGAACAAAAGTTTGATTATGAGTGAGGTAGGGTGTTTAGGATCAATAACCAAAGTTTTGAGATTCGGACATAGTACAGAAGCACGGGAAAATGCCGCAGCTACGTTGTTCAGCCTCTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAGGAGGGTGGTGCAGTGGAAGCCTTGGCAGGGTTGTTGAGAGATGGTACCCCCAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACAGATAACTGCGTTCAGATGATCCAGGCCGGGGCAGTAACGGCACTTGTAGGAGCATTGGGGAATGAATGTGTTGCTGAAGAAGCAGCAGGTGCATTGGCCTTGATTGTTCGACAGCCCGTTGGGGCCGAAGCAGTCAGTAAAGAGAGAGCTGTTGCGGCATTGATAACAATGATGCGATGTGGGACACCGAGAGGAAAAGAGAATGCAGTAGCAGCTTTGCTCGAGTTGTGCCGGAGTGGCGGAGCTGCCACAACCGAGCAAGTGTTCAAGGCTCCCGCTTTGGCGGGGTTGCTCCAAACGCTCCTATTTACCGGTACCAAGCGAGCAAGACGAAAGGCTGCTTCGCTAGCTAGAGTCTTCCAAAGATGTGAGCATGTCACAATGCATTATGGCGGGGTTGGTTATGCCTATGCAAGTAACTCAGCTTCTAACAGGGATTCGAGCTTTGCAAGTGAGGTGACTGTGCCGATATCCATCTCGGTACCCGTCGTATAG 2139 47.36 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVSLLETLAIVATEIVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLDFLKESDAILPHTALLCLKELYLLLYRSKILLDYCSESSKLWMLLQNHSISGHFNDLNLELLTFLDVFPLEEVELGVDVREQVQLLQKQLRRTRMFVDERDEALRSRFLSFLDLFENGRLPNPREMREFFVDKLKIRNAKSCRDEIEFLEEQIVNHEGDVEPPVAVLNGFVAFTRYSRFFLFGFEEDEVETGAANQKKLKKNLITQEIAETFLTIPRDFCCPISLDLMNDPVIISTGQTYDRSSITRWMEEGHSTCPKTGQMLVHTRLAPNRALRNLIMQWCIAHGIPYDPPEGMDASAESYAMASPTRAALEANRATAMILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAVPHLQKLLASPNPVAQENSVTAMLNLSIYDKNKSLIMSEVGCLGSITKVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVQMIQAGAVTALVGALGNECVAEEAAGALALIVRQPVGAEAVSKERAVAALITMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGVGYAYASNSASNRDSSFASEVTVPISISVPVV 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 61148643 61151501 - Hsped.07g18360.1 Hepe07g1836 575231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1836 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515(InterPro)
Hepe07g1836 712 SMART Ubox_2 291 354 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe07g1836 712 FunFam RING-type E3 ubiquitin transferase 287 362 - -
Hepe07g1836 712 Pfam U-box domain 288 358 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe07g1836 712 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe07g1836 712 CDD RING-Ubox_PUB 289 341 IPR045210 -
Hepe07g1836 712 Gene3D - 517 673 IPR011989 -
Hepe07g1836 712 PANTHER U BOX DOMAIN-CONTAINING 55 671 - -
Hepe07g1836 712 FunFam RING-type E3 ubiquitin transferase 488 672 - -
Hepe07g1836 712 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515(InterPro)
Hepe07g1836 712 SMART arm_5 547 585 IPR000225 GO:0005515(InterPro)
Hepe07g1836 712 SMART arm_5 506 546 IPR000225 GO:0005515(InterPro)
Hepe07g1836 712 SMART arm_5 586 626 IPR000225 GO:0005515(InterPro)
Hepe07g1836 712 SMART arm_5 421 461 IPR000225 GO:0005515(InterPro)
Hepe07g1836 712 SMART arm_5 463 504 IPR000225 GO:0005515(InterPro)
Hepe07g1836 712 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515(InterPro)
Hepe07g1836 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Hepe07g1836 712 SUPERFAMILY RING/U-box 277 362 - -
Hepe07g1836 712 Coils Coil 212 232 - -
Hepe07g1836 712 FunFam RING-type E3 ubiquitin transferase 370 470 - -
Hepe07g1836 712 Gene3D - 376 516 IPR011989 -
Hepe07g1836 712 SUPERFAMILY ARM repeat 394 668 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3305 Hepe-Chr2:82636552 Hepe07g1836 Hepe-Chr7:61148643 7.69e-113 dispersed
Hepe04g0691 Hepe-Chr4:60502937 Hepe07g1836 Hepe-Chr7:61148643 1.31e-130 dispersed
Hepe04g1801 Hepe-Chr4:72958917 Hepe07g1836 Hepe-Chr7:61148643 2.19e-36 dispersed
Hepe07g1836 Hepe-Chr7:61148643 Hepe08g0796 Hepe-Chr8:7142474 2.09e-55 dispersed
Hepe07g1836 Hepe-Chr7:61148643 Hepe07g2239 Hepe-Chr7:66798880 8.22e-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1836 - - - 0.0