Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1855 ATGGAGAAAAAGGGTACCATTTTAATGCATAGGTACGAGCTTGGAAGGATGCTCGGACAGGGAACTTTTGCCAAAGTCTACCATGCTCGTAACCTCAAGTCCGGCCAGAGCGTCGCCATCAAGGTCATCGACAAAGAGAAAGTTCTTCGTGTCGGTCTCATCGACCAAATCAAGAGGGAAATCTCTGTGATGAGGCTTGTGCAACATCCCAATGTGGTGCAGCTCTATGAGGTTATGGCTAGCAGGAGTAAGATTTATTTTGCCATAGAGTATGTAAGAGGTGGGGAGCTTTTCAACAAAGTGGCTAAAGGGAAGCTCAAGGAAGATGCTGCTCGTAAGTACTTTCAGCAACTCATTGGTGCTATTGATTATTGTCATAGCCGTGGCGTGTATCATAGAGATATCAAGCCTGAAAATCTGCTTCTTGATGAATTTGGGAATCTTAAGATTTCTGATTTTGGGTTGAGTGCTTTGGCTGAGTCTAGGAGGCAAGATGGGCTTCTTCATACCACTTGTGGTACCCCTGCTTATGTCGCCCCTGAAGTCATCAACAAGAAAGGTTATGATGGTGCTAAAGCTGATATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTGGCTGGTTATCTCCCTTTCCACGATCCAAATCTGATGGAAATGTACAGAAAAATCTCCAGAGGAGAATTCAGATGTCCTCAATGGTTTCCACCAGAAGTTCGAAAGCTCCTCTCTAGAATCCTTAATCCATGTCCCAACACCAGAATAAACATGGCCAGACTCATGGAAAATTCCTGGTTCAAAAAGGGTTTCAAGACAAATGTAGCAACTCCAAAAGCCATTCAATTCAATGGAGACCTCTCTTCTGTGAGCGACGTCCACGCCGCTTTCGCGGACGACATTGGTAACTGCAGCGATGAGGGTGGAAAGCCACGAGCCAGACCCCCGACGAGACGTAACTCCTTCAATGCATTTGACATCATATCTCTCTCGCCAGGTTTCGATCTGTCGGGTCTGTTTGAGGACGATGTGAATGAGAGGCCGCAGACGCGGTTCACGACGACGCAACCGGCGTCGGCGATCGTGTCGAAGTTCGAGGAAATAGCAGAGATGGAGAGGTTCAATGTGATGCAAAAAGATGGGATAGTGAAGCTGCAGGGGAGTAAAGAGGGGAGGAAAGGACAATTGGCTATAGATGCTGAGATATTTGAAGTGACACCTTCTTTTTTTGTGGTGGAGGTGACAAAAACTGCTGGGGATACTTTGGAATACAAGAATTTTTACAACAAAGACATGAGGCCTTCTCTTAAGGATATTGTGTGGACTTGGGAAGGAAGTGAGGAGGAGCAGCAGCAACAGCAGCAACCACAACCATCAAATATTTAG 1383 46.13 MEKKGTILMHRYELGRMLGQGTFAKVYHARNLKSGQSVAIKVIDKEKVLRVGLIDQIKREISVMRLVQHPNVVQLYEVMASRSKIYFAIEYVRGGELFNKVAKGKLKEDAARKYFQQLIGAIDYCHSRGVYHRDIKPENLLLDEFGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFRCPQWFPPEVRKLLSRILNPCPNTRINMARLMENSWFKKGFKTNVATPKAIQFNGDLSSVSDVHAAFADDIGNCSDEGGKPRARPPTRRNSFNAFDIISLSPGFDLSGLFEDDVNERPQTRFTTTQPASAIVSKFEEIAEMERFNVMQKDGIVKLQGSKEGRKGQLAIDAEIFEVTPSFFVVEVTKTAGDTLEYKNFYNKDMRPSLKDIVWTWEGSEEEQQQQQQPQPSNI 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 61484865 61486663 - Hsped.07g18550.1 Hepe07g1855 575250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1855 460 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1855 460 FunFam Non-specific serine/threonine protein kinase 316 440 - -
Hepe07g1855 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe07g1855 460 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1855 460 Gene3D Transferase(Phosphotransferase) domain 1 3 299 - -
Hepe07g1855 460 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165(InterPro)
Hepe07g1855 460 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 433 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe07g1855 460 Pfam NAF domain 319 376 IPR004041 GO:0007165(InterPro)
Hepe07g1855 460 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Hepe07g1855 460 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
Hepe07g1855 460 CDD CIPK_C 322 436 - -
Hepe07g1855 460 Gene3D Kinase associated domain 1, KA1 316 441 - -
Hepe07g1855 460 CDD STKc_SnRK3 11 265 - -
Hepe07g1855 460 FunFam Non-specific serine/threonine protein kinase 2 290 - -
Hepe07g1855 460 SUPERFAMILY Protein kinase-like (PK-like) 8 281 IPR011009 -
Hepe07g1855 460 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1855 Hepe-Chr7:61484865 Hepe08g0685 Hepe-Chr8:6177260 5.42e-201 dispersed
Hepe08g0881 Hepe-Chr8:7993335 Hepe07g1855 Hepe-Chr7:61484865 9.11e-36 transposed
Hepe04g1922 Hepe-Chr4:74154937 Hepe07g1855 Hepe-Chr7:61484865 1.91e-176 wgd
Hepe07g1855 Hepe-Chr7:61484865 Hepe08g0559 Hepe-Chr8:4863431 1.23e-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72965 PF00069 Pkinase 1.10E-71 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1855 K07198 - csv:101206082 783.867