Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1935 ATGGCTTCTCTATCCCCACCAGCGCTTTCCTCCACCACCCTATTTCGTATTAGAAGAAAAAATAATTATCTTCCCAATCCCAATAATGCCCCTCGAGTTTTCTGCAGCTCCACCAATGGCAATGGCAATGGCAATGGCGACCAAAATCCAAACAAATATGATCGTAGAGACATTCTCATTGGGCTCGGCGGTCTCTACGGCGCCTCAACTCTCACCCAATATAATTCCTCCGCCGCCATCGCCGCTCCAATCCAAACCCCCGACATCACCAACTGTGGCCCACCCGACCTGCCACCCGGCGCCAACCCCACCAACTGCTGCCCACCGCCGACCACCTCAATCCTCGACTTCCGCCCACCGCCACCGGGAAAGTTACGTGTCAGGCCCGCCGCCCATTTAGCCGATCAAAACTACATAGACAAATATAAAAGAGCCGTGGAGCTAATGAAAGCTCTGCCGGACGACGACCCACGTAGCTTCATGCAACAAGCGAACGTTCACTGTGCTTATTGTAACGGCGGCTACGACCAAGTCGGCTTTCCGGAGATGGAGGTTCAAATTCATTACTCGTGGCTGTTTTTTCCATTCCATCGTTATTATTTATATTTTCATGAGAAGATCTTGGGCGAGCTTATTGGCGACCCCACTTTCGCTTTGCCGTTCTGGAATTACGATGCTCCGGGAGGAATGAAACTGCCGGCGATTTACGCCGACAAGAAATCGTCGCTTTATGATGAGCTTCGGAATCAAAATCATCTCCCGCCGACGTTGGTGGATTTGGATTACGGTGGAGTTGATCCGACGATTGGCGATGATGCGCAAATAAGGAGTAATTTGAGTATTATGTATCGGCAGATGGTTTCTAATGCCCGTACGCCGTCGCTGTTTTTCGGTAGCGCTTATCTCGCCGGTGACGAGCCATCGCCAGGAGCTGGGTCGGTGGAGAACATTCCACATAATTCGGTTCACGAATGGGTCGGCGACATCAATGAGCCCAACTTCGAGAACATGGGAAACTTCTACTCGGCCGCTAGAGATCCCATCTTCTACGCCCACCACTCCAACATCGACCGCTTGTGGTCCGTCTGGAAGACCCTCGGCGGCCGGCGACAGAACCTCCAAAACCCCAACTGGCTCAACGCCTCCTTCATTTTCTACAACGAGAAAGCTCAAGCCGTCCGCGTCCGAGTCCGCGACTGTCTCGACTCCAAAAACCTCGGCTATGTCTACCAAGACGTCGACCTCCCATGGCTCCAAACTCGCCCCACCCCTCGCCGACGAGCCCAAAATGTGACGGCCAGTGTCCCCTTCGGCATCAACGCCACCCTGGCTGCAGGCGAGTCTGGCCCATCCTCGAGCCGGCTCCGACCGACGAAGATAAAGTTTCCGATAACTCTGAAATCACCGATCAACACAGAAGTGAAGAGGCCGAGGAGGTCAAGGAGCAAGAAGGATAAAGATGAGGAGGAGGAGATTTTGGTAATTTCAGGAATAGAATTCGACGCTAACGTGGCGATAAAGTTCGATGTGTTTATCAACGACGAAGATGACTTGGAGATTAGACCGGATAACACAGAGTTTGCTGGCAGCTTTGTGAACGTGCCACATAAGCATGGTCACGAGAAGAAGGTAAAGACGGGGCTTAGGTTGGGGATAACTGAACTTCTTGAGGATTTGGATGCCGATGATGACGACAAGGGTTTGGATCAGTGTTTTTAA 1719 52.01 MASLSPPALSSTTLFRIRRKNNYLPNPNNAPRVFCSSTNGNGNGNGDQNPNKYDRRDILIGLGGLYGASTLTQYNSSAAIAAPIQTPDITNCGPPDLPPGANPTNCCPPPTTSILDFRPPPPGKLRVRPAAHLADQNYIDKYKRAVELMKALPDDDPRSFMQQANVHCAYCNGGYDQVGFPEMEVQIHYSWLFFPFHRYYLYFHEKILGELIGDPTFALPFWNYDAPGGMKLPAIYADKKSSLYDELRNQNHLPPTLVDLDYGGVDPTIGDDAQIRSNLSIMYRQMVSNARTPSLFFGSAYLAGDEPSPGAGSVENIPHNSVHEWVGDINEPNFENMGNFYSAARDPIFYAHHSNIDRLWSVWKTLGGRRQNLQNPNWLNASFIFYNEKAQAVRVRVRDCLDSKNLGYVYQDVDLPWLQTRPTPRRRAQNVTASVPFGINATLAAGESGPSSSRLRPTKIKFPITLKSPINTEVKRPRRSRSKKDKDEEEEILVISGIEFDANVAIKFDVFINDEDDLEIRPDNTEFAGSFVNVPHKHGHEKKVKTGLRLGITELLEDLDADDDDKGLDQCF 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 63131661 63136930 + Hsped.07g19350.1 Hepe07g1935 575330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1935 572 ProSitePatterns Tyrosinase and hemocyanins CuB-binding region signature. 346 357 IPR002227 GO:0016491(InterPro)
Hepe07g1935 572 Gene3D - 82 419 IPR008922 -
Hepe07g1935 572 PRINTS Tyrosinase copper-binding domain signature 219 224 IPR002227 GO:0016491(InterPro)
Hepe07g1935 572 PRINTS Tyrosinase copper-binding domain signature 188 205 IPR002227 GO:0016491(InterPro)
Hepe07g1935 572 PRINTS Tyrosinase copper-binding domain signature 318 329 IPR002227 GO:0016491(InterPro)
Hepe07g1935 572 PRINTS Tyrosinase copper-binding domain signature 345 363 IPR002227 GO:0016491(InterPro)
Hepe07g1935 572 FunFam Polyphenol oxidase, chloroplastic 82 419 - -
Hepe07g1935 572 ProSitePatterns Tyrosinase CuA-binding region signature. 188 205 IPR002227 GO:0016491(InterPro)
Hepe07g1935 572 MobiDBLite consensus disorder prediction 21 49 - -
Hepe07g1935 572 SUPERFAMILY Di-copper centre-containing domain 83 418 IPR008922 -
Hepe07g1935 572 PANTHER TYROSINASE FAMILY MEMBER 79 557 IPR050316 -
Hepe07g1935 572 MobiDBLite consensus disorder prediction 21 52 - -
Hepe07g1935 572 Pfam Protein of unknown function (DUF_B2219) 462 565 IPR022740 GO:0004097(InterPro)
Hepe07g1935 572 Pfam Common central domain of tyrosinase 158 365 IPR002227 GO:0016491(InterPro)
Hepe07g1935 572 PIRSF PPO_plant 2 568 IPR016213 GO:0004097(InterPro)|GO:0046148(InterPro)
Hepe07g1935 572 Pfam Polyphenol oxidase middle domain 373 423 IPR022739 GO:0004097(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1935 K00422 - - csv:101220458 841.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1935 Hepe-Chr7:63131661 Hepe07g1938 Hepe-Chr7:63193094 4.38e-276 dispersed
Hepe07g1935 Hepe-Chr7:63131661 Hepe07g1937 Hepe-Chr7:63182257 0.0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g103 . Blo16g00268 . . . . Bma06g00259 . . Cmo18g00221 . . . . . . . . . . . . . . . . . . . . . Cone2ag0980 Cone16ag0016 . Cone19ag0209 Lsi02g00509 Csa01g00970 Chy12g01163 Cme12g01586 . . Bda11g01598 . . . . . Sed08g2431 . . . Cma18g00315 . Car18g00232 Cpe09g00958 . Bhi08g01500 Tan05g2974 Cmetu12g0384 Lac10g0588 Hepe07g1935 . . Cla03g00358 Cam03g0378 Cec03g0364 Cco03g0380 Clacu03g0377 Cmu03g0982 Cre03g0674 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000241 4 2 3 0 3 11 2 14 10 2 9 9 3 5 7 3 9 3 2 11 3 3 6 5 8 10 4 3 4 1 159