Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1958 ATGAATGACTTATTCTCCAGCTCGTTCAAAAAGTACACAGATCTGAAGGAACAGGCGAATATGGACAACATGGAGGGTGGGACTGAGAGTGTGAATTTGGAGAAATTCTTCGAGGATGTTGAGAATGTTAAAGATGACATTAAACAGGTGGAAAGTTTGTACAAGAAATTGCAGCAGGACAATGAGGAGTGCAAGACTGTGCACAATGCCAAGACCATGAAGGAGCTCAGGTCGAGAATGGAGACCGATGTGTCTCAGGTTCTGAAGCGTGTCAAAATGATCAAAGGGAAGCTCGAGGGTCTTGAGCGTTCCAATGCCACTCATCGGACCCTCCCCGGGTGCGGCCCTGGCTCCTCCGCCGACCGCACCCGAACCTCCGTCGTCAGCGGCATGGGAAAGAAGCTCAAAGATGTTATGGATGACTTTCAAGGCCTTAGAGCTCGAATGAACGCCGAGTATAAAGAAACCGTCGAGCGAAGATACTTCACAGTGACAGGACAGAAAGCAAACGAAGAGACAATAGAGAATTTGATATCAAGTGGAGAAAGCGAGAGCTTTCTGCAGAAGGCAATTCAAGAACAAGGGAGGGGTCAGATAATGGACACCATCTCAGAGATTCAAGAACGACATGATGCTGTGAAGGAGATAGAGAAGAATTTGATAGAGTTGCATCAGATTTTCTTGGACATGGCAGCTCTGGTTGAGGCTCAAGGCCACCAACTCAACGACATCGAAAGTCATGTCGCACATGCCAATTCCTTCGTCAGAAGAGGAACAGAGCAACTTCAGGAAGCCAGAGAGTACCAGAAGAGTTCTAGGAAGTGGACTTGCTATGCCATCATTTTGGGGATTATTCTCGTTGTCGTTCTCCTCTTCCCACTCTTGTTACAAATTTTACCTCTTTTGTTAAAGTAG 915 46.67 MNDLFSSSFKKYTDLKEQANMDNMEGGTESVNLEKFFEDVENVKDDIKQVESLYKKLQQDNEECKTVHNAKTMKELRSRMETDVSQVLKRVKMIKGKLEGLERSNATHRTLPGCGPGSSADRTRTSVVSGMGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAIILGIILVVVLLFPLLLQILPLLLK 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 63486193 63488096 - Hsped.07g19580.1 Hepe07g1958 575353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1958 304 CDD SNARE_syntaxin1-like 202 264 - -
Hepe07g1958 304 SMART tSNARE_6 198 265 IPR000727 -
Hepe07g1958 304 FunFam Syntaxin 132 196 296 - -
Hepe07g1958 304 CDD SynN 33 190 IPR006011 GO:0016020(InterPro)
Hepe07g1958 304 PANTHER SYNTAXIN 35 285 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Hepe07g1958 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Hepe07g1958 304 Coils Coil 33 67 - -
Hepe07g1958 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe07g1958 304 Pfam SNARE domain 240 291 IPR000727 -
Hepe07g1958 304 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Hepe07g1958 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Hepe07g1958 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020(InterPro)
Hepe07g1958 304 Gene3D - 193 295 - -
Hepe07g1958 304 Gene3D - 33 160 - -
Hepe07g1958 304 SMART SynN_4 28 154 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g0635 Hepe-Chr4:59513215 Hepe07g1958 Hepe-Chr7:63486193 5.79e-83 dispersed
Hepe04g1076 Hepe-Chr4:65401673 Hepe07g1958 Hepe-Chr7:63486193 7.16e-105 dispersed
Hepe04g1523 Hepe-Chr4:70752625 Hepe07g1958 Hepe-Chr7:63486193 2.05e-56 dispersed
Hepe07g1958 Hepe-Chr7:63486193 Hepe08g0474 Hepe-Chr8:4173033 1.03e-65 dispersed
Hepe07g1958 Hepe-Chr7:63486193 Hepe05g0449 Hepe-Chr5:5903970 4.66e-112 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1958 K08486 - csv:101217140 517.309