Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1961 ATGCCAACGCACGGTTTCTATACCAGAGTTTCCAGTCTTTTCCATGATCATCCTTCGCTTTCCAGGCTCCTTCTTCTTGTCACCGTCAGTGGGGGGAGCCTTGTAGCATATGCTGATGCTAGCCAAACCAATGGTGTACCCAGTATTGCATCTACTGCCAATGTAGATGAGAGAAAGAAGAAGGTGGTAGTGCTTGGAACTGGATGGGCGGGAACAAGTTTCTTGAAGAATATTAAAGATCCCTCCTATGAGGTTCAAGTGATATCACCTCGTAATTTCTTTGCATTCACCCCATTATTGCCAAGTGTTACATGTGGTACAGTGGAAGCCCGTAGCATTGTTGAACCAATTCGCAACATTGTGAGGAAGAAAAAGGTAGATATCGAATTCAATGAAGCAGAATGCTACAAGATTGATGCCGGAAATAGAAAACTCTACTGTCGATCTAATGAAAATAACAATCTGAATGGGAAAAAGGAATTTGTTGTGGACTATGACTACCTAGTGATAGCTGTGGGAGCACAAGTTAATACATTCAATACTCCTGGTGTTGTAGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATACGAAGAACAGTAATTGATTGCTTTGAGAGGGCAAGTCTGCCTACCCTGAATGAAGAAGATAGAAAGAAATTTCTTCATTTTGCTATTGTTGGTGGTGGCCCCACTGGTGTGGAATTTGCAGCAGAACTTCATGATTTTGTTAATGAAGACTTGGTCAAGTTATATCCTGGACTTCAAGAATTTGTAAAAATTACTCTTCTCGAGGCAGGAGATCATATCTTGAATATGTTTGACAAAAGAATTACAGCTTTTGCTGAAGAGAAATTCCGTAGAGATGGTATTGATGTTAAGACAGGATCAATGGTAATCAAGGTAACTGATAAAGAGATTGCCACTAAGGAAATGAAGAATGGAGAAATATCTTCTATGCCTTATGGAATGACAGTATGGTCAACTGGTATAGGAACTCGTCCGATCATAAAGGACTTTATGACACAGATTGGTCAGGCTAACAGACGTGCTTTGGCAACCGATGAATGGCTTCGAATTGAGGGTTGTGATAATGTATATGCACTTGGTGACTGCGCTACTATTAATCAGCGAAGTGTCATGGAAGATATCTCGGCAATTTTTAGCAAGGCAGACAGAGACAATTCAGGGACACTTACAGTAAAAGAATTTAAAGAAGTCATTGATGACATATGTGAAAGATATCCTCAAGTGGAGTTATATTTAAAGAATAAGCAAATGCACGACATTGTTGATCTTTTAAAAGGATCTAAGGAGGATGTAGCGAAGGAATCAATCGAATTAAACATTGAAGAGTTTAAATCAGCTCTTTCCCAAGTTGATTCTCAAATGAAGAATCTTCCTGCTACCGCACAGGTGGCAGCTCAACAAGGTGCATATCTTGCCAATTGTTTTAACCGTATGGAAGAGTGCGAACAAAATCCTGAAGGTCCTCTTAGGTTTAGAGGATCAGGACGACACCGTTTTCGTCCCTTTAGGTACAAACATCTTGGACAATTTGCACCGTTGGGAGGAGAACAAACGGCTGCACAACTTCCTGGGGATTGGGTGTCCATTGGTCACAGCTCTCAGTGGCTTTGGTACTCTGTTTATGCAAGTAAGCAAGTTAGTTGGCGTACAAGAGCACTCGTGGTTACGGATTGGACGAGGCGTTTTGTTTTCGGGAGAGATTCGAGTCGTATATGA 1755 41.14 MPTHGFYTRVSSLFHDHPSLSRLLLLVTVSGGSLVAYADASQTNGVPSIASTANVDERKKKVVVLGTGWAGTSFLKNIKDPSYEVQVISPRNFFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKKVDIEFNEAECYKIDAGNRKLYCRSNENNNLNGKKEFVVDYDYLVIAVGAQVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPTLNEEDRKKFLHFAIVGGGPTGVEFAAELHDFVNEDLVKLYPGLQEFVKITLLEAGDHILNMFDKRITAFAEEKFRRDGIDVKTGSMVIKVTDKEIATKEMKNGEISSMPYGMTVWSTGIGTRPIIKDFMTQIGQANRRALATDEWLRIEGCDNVYALGDCATINQRSVMEDISAIFSKADRDNSGTLTVKEFKEVIDDICERYPQVELYLKNKQMHDIVDLLKGSKEDVAKESIELNIEEFKSALSQVDSQMKNLPATAQVAAQQGAYLANCFNRMEECEQNPEGPLRFRGSGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRALVVTDWTRRFVFGRDSSRI 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 63504837 63511002 + Hsped.07g19610.1 Hepe07g1961 575356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1961 584 SUPERFAMILY FAD/NAD(P)-binding domain 219 379 IPR036188 -
Hepe07g1961 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 62 81 - -
Hepe07g1961 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 165 183 - -
Hepe07g1961 584 PRINTS FAD-dependent pyridine nucleotide reductase signature 226 244 - -
Hepe07g1961 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 428 583 - -
Hepe07g1961 584 Pfam NDH2 C-terminal domain 519 580 IPR054585 -
Hepe07g1961 584 SUPERFAMILY FAD/NAD(P)-binding domain 59 278 IPR036188 -
Hepe07g1961 584 Coils Coil 446 466 - -
Hepe07g1961 584 ProSitePatterns EF-hand calcium-binding domain. 395 407 IPR018247 -
Hepe07g1961 584 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 411 - -
Hepe07g1961 584 PANTHER NADH DEHYDROGENASE 54 584 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Hepe07g1961 584 ProSiteProfiles EF-hand calcium-binding domain profile. 382 417 IPR002048 GO:0005509(InterPro)
Hepe07g1961 584 SMART efh_1 386 414 IPR002048 GO:0005509(InterPro)
Hepe07g1961 584 SUPERFAMILY EF-hand 375 470 IPR011992 -
Hepe07g1961 584 Gene3D - 427 583 - -
Hepe07g1961 584 Gene3D - 49 409 - -
Hepe07g1961 584 Pfam Pyridine nucleotide-disulphide oxidoreductase 60 381 IPR023753 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1825 Hepe-Chr4:73188383 Hepe07g1961 Hepe-Chr7:63504837 2.27e-66 dispersed
Hepe07g1961 Hepe-Chr7:63504837 Hepe08g0722 Hepe-Chr8:6512949 1.43e-57 dispersed
Hepe02g0166 Hepe-Chr2:1760893 Hepe07g1961 Hepe-Chr7:63504837 1.36e-289 wgd
Hepe07g1961 Hepe-Chr7:63504837 Hepe08g0511 Hepe-Chr8:4483458 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1961 K03885 - csv:101204145 1111.29