Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1978 ATGAATCCTCCCAAACGGGCCGTCTTCATCTTTCATATATGGTTGTTTTTAGTCATTTTTGTTGGCAGCCTCCAGCTTCAGAGTTCTACCATCCACATCATCAAAGATGGCGATCGATTGGTATCCACAAACAACAACTTCGCTCTTGGATTTTTCAGTTTCAACAATTCCACTACTCGTCGATATGTTGGAATTTGGTACAATCAAATTCCTGAACTAACCCTCGTTTGGGTTGCCAACACAAACCAACCCCTCAACGATACCTCGGGAGCTCTTTCAATCGACCGTCATGGAAACGTCGTCGTTTTTAGCGCCACACGAACCATATCTCTTTGGTCTACAAAAGCTACGATCCAACCAAACAGCGTGTCGGTCGAGCTTTGGAATACGGGAAATCTCGCCGTGGTTGAACGACAAAGTCGAAGGGTTATTTGGCAAAGTTTTGATTATCCATCTAATGTCCTTCTTCCGTTCATGAAATTGGGAGTCAACCGACGGACCGGGTTCAGTTGGTTTCTAACTTCATGGAAGGCACAAGACGATCCGGCAACTGGGAATTTCAGTTGTCGGATAAACTCGACCGGTTATCCACAATTGGTTTCGTACAAGGGGGATGTTCCGGTTTGGCGGGGCGGGTCTTGGACCGGTCGGAGGTGGACCGGAGTACCGGAAATGACGAGGACATTTATAATCAACACATCGTATATCGACAATAGTGAAGAGATTTCTATAACAAACGGCATAACGGTCGACACGGTTCTAATGAGGATGACATTAGACGAATTCGGTTCGTTGCATCGGTCCACATGGAACAAAGAGGACGGTAAGTGGAATGAGTTTTGGTCGGTCCCGACCGAGTGGTGCGACAACTACAACCGGTGTGGTCCGAATAGTAATTGCGACCCGTACGACACAGACCAGTTCCAATGCAAGTGCCTGCCTGGGTTCGAACCGCGGTCAGATCGGAATTGGTTGTTGAGAGATCCGTCTGGTGGGTGCGTAAGGAAGAGGCCGAACGCCATGTGTCGGAGTGGAGAGGGTTTTGTGAAGGTGACACGTGTGAAGGTGCCGGACACGTCAATGGCACGTGGGGATAAGAGTATGAGTTTAGAAGCGTGCGAACAAGCATGTGTGAAGGATTGTAAGTGCATGGCTTACACGAGCGAAAATGAGACGACGGGGATGGGGTGTATTACGTGGTATGGAGACTTGGTAGACACCCGGACCTATGCCAATGTGGGTCAAGATCTTTACGTAAGAGTTGATGCTCTTGAATTAGCTCAATATGCACAAAAATCAAATCGTGATCCAACAAAGAAAGTGGTGGCAATAGTTGTAGTGTCTTTTGTCGCAATGTTGCTCCTCGTGACCTCGCTAGTTTACTTATGGGAAATGGCAAGAAAAAAAAGGGAGAGATCTACGAGTTTATCCTATAACTTTGGGGACTCTCCAAATCCAAAGGAATTTGATGAAAGTAGAACAAGCTCAGATCTGCCTGTATTTGACTTGTATACCATAGCAAAAGCAACACACAATTTTTCTTATAATAACAAGCTTGGAGAAGGTGGCTTTGGTGCAGTTTATAAGGGAAAGCTTATAAATGGAGAGGAAATTGCAGTTAAAAGGCTAGCTAAGAATTCAGGACAAGGAGTTGGAGAGTTCAAGAATGAAGTAACTTTAATTGCAAAGCTTCAACATAGAAACCTCGTCAGAATTTTAGGCTACTGCGTTACAAATGAAGAAAAGATGCTTGTATATGAATACTTGCCAAACAAAAGCTTGGACTCTTTCATTTTCGATGAAAGCAAGAGGGCTTTGCTCACTTGGAGAATACGTTTCGAAATCATTTGTGGAGTCGCCAGAGGACTCTTATATCTTCATCAAGATTCAAGATTAAAAATCATCCATCGAGATTTGAAGGCGAGCAATATCCTATTAGATGTTGATTTGAATCCAAAAATTGCAGATTTTGGTATGGCACGAATATTTGGTCAAGATCAAATTCAAGCAAACACAAATCGAATTGTGGGAACATATGGTTATATGTCACCCGAATATGCAATGGAAGGCTTCTTTTCAGTGAAATCCGATGTATATAGCTTCGGAGTTTTAGTGCTAGAGATGATTACAGGAAGAAAGAACACCAACTATGATTCCTCCTACTTAAACTTGGTCGGACATGTTTGGGAGCTTTGGAAATTGGAAAATGCAATGGAATTAGTGGACTCAAGTTTGGAAGAATCAAGCTGTGGATATGAAATCATGAGATGCATCCAAATTGGGCTATTGTGTGTGCAGGAGGATCCGACAGATCGTCCGACCATGTCGACTGTCGTCTTCATGTTGGGCAATGAAGTGAGTCTTCCTTCTCCAAAGAAACCTGCTTTTATTTTGAAGAGAAAGTACAACAGTGGAGATCCATCCACCAGTACTGAAGGAGCCAACTCTGTAAATGATGTAACAATTTCCATAATCCATGCTCGTTAA 2487 43.59 MNPPKRAVFIFHIWLFLVIFVGSLQLQSSTIHIIKDGDRLVSTNNNFALGFFSFNNSTTRRYVGIWYNQIPELTLVWVANTNQPLNDTSGALSIDRHGNVVVFSATRTISLWSTKATIQPNSVSVELWNTGNLAVVERQSRRVIWQSFDYPSNVLLPFMKLGVNRRTGFSWFLTSWKAQDDPATGNFSCRINSTGYPQLVSYKGDVPVWRGGSWTGRRWTGVPEMTRTFIINTSYIDNSEEISITNGITVDTVLMRMTLDEFGSLHRSTWNKEDGKWNEFWSVPTEWCDNYNRCGPNSNCDPYDTDQFQCKCLPGFEPRSDRNWLLRDPSGGCVRKRPNAMCRSGEGFVKVTRVKVPDTSMARGDKSMSLEACEQACVKDCKCMAYTSENETTGMGCITWYGDLVDTRTYANVGQDLYVRVDALELAQYAQKSNRDPTKKVVAIVVVSFVAMLLLVTSLVYLWEMARKKRERSTSLSYNFGDSPNPKEFDESRTSSDLPVFDLYTIAKATHNFSYNNKLGEGGFGAVYKGKLINGEEIAVKRLAKNSGQGVGEFKNEVTLIAKLQHRNLVRILGYCVTNEEKMLVYEYLPNKSLDSFIFDESKRALLTWRIRFEIICGVARGLLYLHQDSRLKIIHRDLKASNILLDVDLNPKIADFGMARIFGQDQIQANTNRIVGTYGYMSPEYAMEGFFSVKSDVYSFGVLVLEMITGRKNTNYDSSYLNLVGHVWELWKLENAMELVDSSLEESSCGYEIMRCIQIGLLCVQEDPTDRPTMSTVVFMLGNEVSLPSPKKPAFILKRKYNSGDPSTSTEGANSVNDVTISIIHAR 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 63767820 63773558 + Hsped.07g19780.1 Hepe07g1978 575373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1978 828 ProSitePatterns Protein kinases ATP-binding region signature. 519 541 IPR017441 GO:0005524(InterPro)
Hepe07g1978 828 CDD STKc_IRAK 519 782 - -
Hepe07g1978 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 182 IPR036426 -
Hepe07g1978 828 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 28 794 - -
Hepe07g1978 828 Pfam D-mannose binding lectin 74 177 IPR001480 -
Hepe07g1978 828 PIRSF SRK 2 828 IPR024171 GO:0004674(InterPro)
Hepe07g1978 828 Gene3D Phosphorylase Kinase; domain 1 487 588 - -
Hepe07g1978 828 Pfam Protein tyrosine and serine/threonine kinase 515 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe07g1978 828 SMART ntp_6 343 421 IPR003609 -
Hepe07g1978 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 148 - -
Hepe07g1978 828 Gene3D - 26 148 IPR036426 -
Hepe07g1978 828 Pfam Domain of unknown function (DUF3403) 784 828 IPR021820 GO:0004674(InterPro)
Hepe07g1978 828 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Hepe07g1978 828 SMART serkin_6 513 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1978 828 Pfam PAN-like domain 342 407 IPR003609 -
Hepe07g1978 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 481 588 - -
Hepe07g1978 828 CDD EGF_CA 288 320 - -
Hepe07g1978 828 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 790 - -
Hepe07g1978 828 CDD PAN_AP_plant 343 421 - -
Hepe07g1978 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe07g1978 828 CDD B_lectin 33 151 IPR001480 -
Hepe07g1978 828 ProSiteProfiles Protein kinase domain profile. 513 796 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g1978 828 SMART blect_4 31 151 IPR001480 -
Hepe07g1978 828 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544(InterPro)
Hepe07g1978 828 SUPERFAMILY Protein kinase-like (PK-like) 489 782 IPR011009 -
Hepe07g1978 828 Gene3D Laminin 288 337 - -
Hepe07g1978 828 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
Hepe07g1978 828 Gene3D Transferase(Phosphotransferase) domain 1 589 789 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1973 Hepe-Chr7:63690647 Hepe07g1978 Hepe-Chr7:63767820 1.77e-217 dispersed
Hepe07g1974 Hepe-Chr7:63703114 Hepe07g1978 Hepe-Chr7:63767820 1.22e-208 dispersed
Hepe07g1978 Hepe-Chr7:63767820 Hepe08g0498 Hepe-Chr8:4359002 8.76e-127 dispersed
Hepe07g1975 Hepe-Chr7:63744851 Hepe07g1978 Hepe-Chr7:63767820 4.92e-83 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72976 PF07714 PK_Tyr_Ser-Thr 7.90E-48 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1978 - - - 0.0