Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe07g1980 | ATGGCCGATGAATTTCCAGCCGGAATTTGCGGCCGGAAGTTTTGGGATTCAACCAAAACCACCCTTTCCTCGTCGGCAGCCGCCAATCCCTCGCCGTGTTCCATTGGTGACTCTACAGCCTTCTTGATTGATCCCACCATTAGAACATCTTCTAATTGGAACCAAACTTTTCTTGGAGATGATGGACGACAAAGATCAGTTGACACCACTTTGGTGGTGGATTCAATGACGGGCACAAAATTGAATTATGATCACAAAGAAACTAGTGGATCCAACGAGCAACAAAGTCCTTCCATTTTCAAGGTCGATCACGACTTGGTGTTTTTGATGGACCAACCAGCTTATAATCAAAGCCCTAATCCCAAGTTTTACGATAATATTGTCACAACTACATGTCAAGAGTTACCAATGGCTTTCCCTTTTGGGACCATTTCAAATGGGTACGCTCCAACGTTGTTGCAAAGTTCATTGGATCAACCAAAACAATTCCTTGTCAACAACAACGTCTGGACCACCATTGATTGTTGTTCCTCAACAAATTCAGATGAGTTGTTGCCTTGTCGCCCTATGTTTGAAACCCACTTGCAACCTTCATTGCAGCACCAGCTACAACCTCCAGCCTTGAATTTCTCCGACAGGATTAGACCCAAATGCCCAAACCTTACAACAAAGGTGATTAGTTGTGATGAAGTTGTTCAAGATTGGGATAGGGTTGAGAGGAAAAACGAAAGTAATGAAATTGCACAAATCAAAAGGGCAAGAAGTGAGATGTCATCCCCATTACCCACTTGTAAGGTTCGAAAAGAGAAGCTAGGCGACAAGATCACAGCCCTCCAACAACTCGTTTCACCGTTTGGAAAGACTGATACTGCATCAGTTCTACACGAAGCAATTGAGTACATCAAGTTTCTTCATGATCAAGTCCGTGTTTTGAGTAGTCCATATATGGAAATTGGAGACCACGATCAAGAGCAGCAGGTTAAGGAAGAACTGAAACACAGCGAGGAGAATAAGAAACGAGATCTAAGAAGTCGAGGACTTTGTCTGGTGGCAAATCCAAGTACAGTTGCATTAGCAAATGGCAATACACTTGATTTCTGGTCACCCACATTTGGAGGAACTTTTAGGTAA | 1131 | 43.15 | MADEFPAGICGRKFWDSTKTTLSSSAAANPSPCSIGDSTAFLIDPTIRTSSNWNQTFLGDDGRQRSVDTTLVVDSMTGTKLNYDHKETSGSNEQQSPSIFKVDHDLVFLMDQPAYNQSPNPKFYDNIVTTTCQELPMAFPFGTISNGYAPTLLQSSLDQPKQFLVNNNVWTTIDCCSSTNSDELLPCRPMFETHLQPSLQHQLQPPALNFSDRIRPKCPNLTTKVISCDEVVQDWDRVERKNESNEIAQIKRARSEMSSPLPTCKVRKEKLGDKITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVRVLSSPYMEIGDHDQEQQVKEELKHSEENKKRDLRSRGLCLVANPSTVALANGNTLDFWSPTFGGTFR | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 63807806 | 63813585 | - | Hsped.07g19800.1 | Hepe07g1980 | 575375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe07g1980 | 376 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 265 | 317 | IPR036638 | GO:0046983(InterPro) | |
| Hepe07g1980 | 376 | Gene3D | - | 263 | 337 | IPR036638 | GO:0046983(InterPro) | |
| Hepe07g1980 | 376 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 255 | 304 | IPR011598 | GO:0046983(InterPro) | |
| Hepe07g1980 | 376 | FunFam | Transcription factor bHLH123 family | 265 | 327 | - | - | |
| Hepe07g1980 | 376 | CDD | bHLH_AtbHLH_like | 265 | 312 | IPR045239 | - | |
| Hepe07g1980 | 376 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 96 | 354 | IPR045843 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe02g0625 | Hepe-Chr2:6565959 | Hepe07g1980 | Hepe-Chr7:63807806 | 2.07e-29 | dispersed | |
| Hepe07g1128 | Hepe-Chr7:21387435 | Hepe07g1980 | Hepe-Chr7:63807806 | 2.24e-43 | dispersed | |
| Hepe07g1980 | Hepe-Chr7:63807806 | Hepe09g0779 | Hepe-Chr9:7536346 | 3.13e-32 | dispersed | |
| Hepe04g1799 | Hepe-Chr4:72946006 | Hepe07g1980 | Hepe-Chr7:63807806 | 8.08e-48 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe07g1980 | - | - | - | 0.0 |