Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g1992 ATGGATTCGCCTGAAATTGCTGATTGGGTTTTCGATTACGGTGTGATTGAGGACATTCCAGTTCCCGGCGGTGATCTACCTTCACTGGATCTTCCTGTTTTCACTTTGCCTTCTCGTGATTTCACTGCCTCCTTCAGGACAGACTTTGATGAGCCACATGGAAGGACAGACGATATAAAAGAATCTGGGTCCAGGAAAAGGATGAGCTCTGGATCTGGGTCTAAAGCACATAAAGAGAAAATGCGGAGGGATAGACTAAATGACAGGTTTCTGGAATTGAATTCCATCCTCAATCATGGAAGGCCTCCCAAAATTGACAAGTCTGCTATTTTGGGTGATGCAGCTCGAATGATCATACAGCTGAGGGATGAGGCTCAGAAGCTGAAGGAGTCTAATGAGAATTTTGTGGAGAAGATTAATGAAATGAAGGCTGAAAAGAATGAACTACGAGATGAGAAACAGAGGCTGAAAGAAGCAAAAGACAACCTTGAACAGAAAATGAAGGGCTTCAATGCTCAACCAAGTTTCTTGCCTCACCCTCCTGCATTTTCTTCTCCAAGTCAGGTTGTTGGGGGAAAGTTGGTACCTGTGATTGGCTATCCAGGAGTATCCATGTGGCAGTTTATGCCTCCCGGCGCCGTTGATACCTCGCAAGACCACGTTCTTCGGCCACCAGTCGCCTGA 684 46.05 MDSPEIADWVFDYGVIEDIPVPGGDLPSLDLPVFTLPSRDFTASFRTDFDEPHGRTDDIKESGSRKRMSSGSGSKAHKEKMRRDRLNDRFLELNSILNHGRPPKIDKSAILGDAARMIIQLRDEAQKLKESNENFVEKINEMKAEKNELRDEKQRLKEAKDNLEQKMKGFNAQPSFLPHPPAFSSPSQVVGGKLVPVIGYPGVSMWQFMPPGAVDTSQDHVLRPPVA 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 63950339 63952917 + Hsped.07g19920.1 Hepe07g1992 575387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g1992 227 SMART finulus 76 127 IPR011598 GO:0046983(InterPro)
Hepe07g1992 227 Coils Coil 111 173 - -
Hepe07g1992 227 Pfam Helix-loop-helix DNA-binding domain 75 122 IPR011598 GO:0046983(InterPro)
Hepe07g1992 227 PANTHER BHLH TRANSCRIPTION FACTOR 8 227 IPR044818 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006879(InterPro)|GO:0046983(InterPro)
Hepe07g1992 227 MobiDBLite consensus disorder prediction 45 65 - -
Hepe07g1992 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 70 121 IPR011598 GO:0046983(InterPro)
Hepe07g1992 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 149 IPR036638 GO:0046983(InterPro)
Hepe07g1992 227 MobiDBLite consensus disorder prediction 45 83 - -
Hepe07g1992 227 Gene3D - 74 148 IPR036638 GO:0046983(InterPro)
Hepe07g1992 227 CDD bHLH_AtILR3_like 75 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g1992 Hepe-Chr7:63950339 Hepe08g1394 Hepe-Chr8:16413391 4.10e-19 dispersed
Hepe01g1311 Hepe-Chr1:78330567 Hepe07g1992 Hepe-Chr7:63950339 1.79e-62 wgd
Hepe07g1992 Hepe-Chr7:63950339 Hepe08g0487 Hepe-Chr8:4274991 7.62e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56016 PF00010 HLH 7.70E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g1992 - - - 0.0