Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe07g2036 | ATGTCTTGTTCAAATCTGACTATGTTGATGTCTTCAAAACCAACCGTCTCTGATGCATCCTCCCTTTCTTTCAGCTCTTTTCTGAGCCCTTTTCAGCTCCCTTCACAAAGCTACCCTGCCCGATCATTGTCAGTTTCGCCGATTCATTGCAGTCTTCGGGATCTCCGAGACCGTATCGAGTCGGTGAAGAACACCCAAAAGATCACTGAAGCTATGAAGCTTGTTGCTGCTGCCAAAGTCCGCAGGGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCAGAAGCCTTGGTTGAGGTCCTTTACAACATCAACGAGCAACTTCAAACAGAAGATGTTGATGTTCCTCTAACCAAAGTAAGACCTGTCAAGAAGGTTGCATTAGTAGTTGTCACTGGTGACCGAGGTCTTTGCGGCGGTTTCAACAACAGCATCATAAAGAAAGCTGAAGCCAGGATTTCAGAATTGAAGCAACTGGGTCTTGATTACACTGTCATCAGTGTTGGCAAAAAGGGTAACTCCTATTTCCTTCGCCGGCCTTACATCCCGGTCGATAAGTACTTTGAAGGTGGCACTCTCCCAACTGCCAAAGAAGCTCAAGCTATAGCTGATGATGTTTTCTCACTCTTTGTTAGTGAGGAGGTTGATAAAGTAGAGCTTTTGTACACGAAATTCGTGTCTTTGGTCAAATCTGATCCTATAATTCACACCCTTCTTCCTCTCTCACCCAAGGGAGAGATCTGTGATATAAATGGAATCTGTGTTGATGCTGCAGAAGATGAGTTCTTCAGGTTGACAACAAAGGAAGGGAAGTTGACAGTGGAAAGGGATACGGTGAGGACGAGCACATCGGATTTCTCTCCGATTTTGGAGTTTGAGCAAGACCCAGTTCAGATCTTGGATGCTTTGTTGCCTCTGTATTTGAACAGTCAGGTTTTGAGGTCACTGCAAGAATCACTTGCTAGTGAGCTTGCAGCTAGAATGAGTGCAATGAGCAATGCTTCTGATAATGCTTCTGAGCTGAAGAGAAATTTGTCGATTGTGTACAACAGACGGCGCCAAGCTAAGATCACTGGAGAAATATTGGAGATTGTTGCTGGTGCTAATGCTTTGACTTAA | 1119 | 44.68 | MSCSNLTMLMSSKPTVSDASSLSFSSFLSPFQLPSQSYPARSLSVSPIHCSLRDLRDRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSEALVEVLYNINEQLQTEDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNSIIKKAEARISELKQLGLDYTVISVGKKGNSYFLRRPYIPVDKYFEGGTLPTAKEAQAIADDVFSLFVSEEVDKVELLYTKFVSLVKSDPIIHTLLPLSPKGEICDINGICVDAAEDEFFRLTTKEGKLTVERDTVRTSTSDFSPILEFEQDPVQILDALLPLYLNSQVLRSLQESLASELAARMSAMSNASDNASELKRNLSIVYNRRRQAKITGEILEIVAGANALT | 372 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 64556874 | 64558244 | + | Hsped.07g20360.1 | Hepe07g2036 | 575431 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe07g2036 | 372 | Gene3D | - | 119 | 242 | - | - | |
| Hepe07g2036 | 372 | PRINTS | ATP synthase gamma subunit signature | 123 | 142 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | PRINTS | ATP synthase gamma subunit signature | 349 | 370 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | PRINTS | ATP synthase gamma subunit signature | 216 | 233 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | PRINTS | ATP synthase gamma subunit signature | 318 | 337 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | ProSitePatterns | ATP synthase gamma subunit signature. | 357 | 370 | IPR023632 | - | |
| Hepe07g2036 | 372 | Pfam | ATP synthase | 51 | 371 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | NCBIfam | ATP synthase F1 subunit gamma | 51 | 371 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | PANTHER | ATP SYNTHASE GAMMA CHAIN | 1 | 371 | IPR000131 | GO:0000275(PANTHER)|GO:0009535(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER) | |
| Hepe07g2036 | 372 | FunFam | ATP synthase gamma chain, chloroplastic | 268 | 371 | - | - | |
| Hepe07g2036 | 372 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 50 | 118 | - | - | |
| Hepe07g2036 | 372 | FunFam | ATP synthase gamma chain, chloroplastic | 50 | 117 | - | - | |
| Hepe07g2036 | 372 | Hamap | ATP synthase gamma chain [atpG]. | 49 | 371 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | SUPERFAMILY | ATP synthase (F1-ATPase), gamma subunit | 51 | 371 | IPR035968 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | CDD | F1-ATPase_gamma | 51 | 368 | IPR000131 | GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro) | |
| Hepe07g2036 | 372 | FunFam | ATP synthase gamma chain, chloroplastic | 119 | 242 | - | - | |
| Hepe07g2036 | 372 | Gene3D | ATP synthase, gamma subunit, helix hairpin domain | 267 | 371 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe05g0578 | Hepe-Chr5:8209307 | Hepe07g2036 | Hepe-Chr7:64556874 | 3.24e-125 | dispersed | |
| Hepe07g2467 | Hepe-Chr7:68978243 | Hepe07g2036 | Hepe-Chr7:64556874 | 3.08e-11 | transposed | |
| Hepe04g1768 | Hepe-Chr4:72617337 | Hepe07g2036 | Hepe-Chr7:64556874 | 2.18e-207 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe07g2036 | K02115 | - | csv:101214408 | 638.262 |