Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2098 ATGAGCAATGGAATGGCTGTGGGTGTGTGCACCGACAAGAACATGGGTTCGGGGATTAGGATTTGGGATGTGAAAACAGGCGAATCTGTCCTTCACATTCCGAGCTGCGCTTCGCCTCCTTCTGGTTTGATTTGCTTGAGAAATCAATTCCTGGTTGCTTCTCAGACTCGTAAGGAAGGCTCCGTCGGTGGTGGATCCATCTTCATTTGGTCCCTCAACAAGCCTCAATCACCTCTCCGGAGCTATCCATTGGAGCCCATTGGACCACTTGCCTCAACTAAGGACACTGTATATCTTGCTGGCGGAGCTCATTCTGGAAATATTCATCTTTGGGAGGTTGGTAGTGGTAAATTGCTCAAGCTTTGGAGTGGTCACCATAAACCCATAAAATTCATCCTGTTTTCTTGGGACGATTCGTTTCTCATTACTGGTTCAGCCGATGGAATGATTTGTGTTTGGTCCATGATTGGTTTGCTGGATGTGGAACAACTTGTGGGAAGCTCTCAGCCAATGTTGTATTGTCTCATGGAACATAAGTCTTCTTTAACCGGTCTACTCACTATGTCTGGCCGCTCGATGTCGATGATCATTTCAAGCTCCCTCGACGGCACTTTAAAGTTTTGGGATTTAATGTCGGGAATGATTAGGGGAACTCAAGCTCATATAGAGGGGATCACTGCAACTGTTCTTCATCCAACTGATCAACTTCTCTTCTCTGGGACAGCTGATGGCCAAATATTTGCTAGCAGGCTTCAATTCGGATTGGATAATTGCATTGCCATTAAAGAAAACCAATTTCTTGCACCAAAAGGACACAAAGGAGCTATTACTGCTCTGGTCTTCAGTCAGATAGATCTGATTTCTGCATCCGAGGATTGCACTGTCTGCATTTGGGACATCAAGAGTCGGAGGATCATACAAAAGCTTGACCACAAGAAAGGGAGAATAACCAACTTGGTAGCAATTCCACGGTCGTCTCTGATCTCTACGTCAAACCGTAAGAGAGTCTTGAATCGTCTCTCCATGTCCTCGCTCGACAAGTATCCTCAGCCTCCCAACTTCTTGAACAACATCATACCTCGCTTTCCCTCCCTCCACAAGAATCTCAATTCTATCGGCTTCACAAGTACTGCCTCATTCAATCACCAAATATTTGATATGCAGACAGAAGGGACATCAGCAGCAATACAGATGAAAGTAGATACAAGTTTAGAGAGTCGAATGTGGGCTTCCAGAATGACAAAGGAAGTAATGGAGATGAACAACCATCTTCAATCACGGTTGCTAGACATGATGCGGATTCGGTTGTTCGGGCCTGCGAAAATTAATTCGTCCTCGAAGAAACGAAAAGAAGAAAGAGATCGAGTTGCAAGGACGAGGGAGAAACATCATCCATTGTCATTCCATTAA 1410 45.04 MSNGMAVGVCTDKNMGSGIRIWDVKTGESVLHIPSCASPPSGLICLRNQFLVASQTRKEGSVGGGSIFIWSLNKPQSPLRSYPLEPIGPLASTKDTVYLAGGAHSGNIHLWEVGSGKLLKLWSGHHKPIKFILFSWDDSFLITGSADGMICVWSMIGLLDVEQLVGSSQPMLYCLMEHKSSLTGLLTMSGRSMSMIISSSLDGTLKFWDLMSGMIRGTQAHIEGITATVLHPTDQLLFSGTADGQIFASRLQFGLDNCIAIKENQFLAPKGHKGAITALVFSQIDLISASEDCTVCIWDIKSRRIIQKLDHKKGRITNLVAIPRSSLISTSNRKRVLNRLSMSSLDKYPQPPNFLNNIIPRFPSLHKNLNSIGFTSTASFNHQIFDMQTEGTSAAIQMKVDTSLESRMWASRMTKEVMEMNNHLQSRLLDMMRIRLFGPAKINSSSKKRKEERDRVARTREKHHPLSFH 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 65267694 65273242 - Hsped.07g20980.1 Hepe07g2098 575493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2098 469 Gene3D - 171 425 IPR015943 GO:0005515(InterPro)
Hepe07g2098 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 308 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 302 - -
Hepe07g2098 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 122 155 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 PRINTS G protein beta WD-40 repeat signature 141 155 IPR020472 -
Hepe07g2098 469 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Hepe07g2098 469 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Hepe07g2098 469 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 122 155 - -
Hepe07g2098 469 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 13 316 IPR011047 -
Hepe07g2098 469 Pfam WD domain, G-beta repeat 175 209 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 Pfam WD domain, G-beta repeat 116 154 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 Pfam WD domain, G-beta repeat 270 299 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 MobiDBLite consensus disorder prediction 440 469 - -
Hepe07g2098 469 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Hepe07g2098 469 ProSitePatterns Trp-Asp (WD) repeats signature. 196 210 IPR019775 -
Hepe07g2098 469 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 218 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 Gene3D - 2 170 IPR015943 GO:0005515(InterPro)
Hepe07g2098 469 SMART WD40_4 212 250 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 SMART WD40_4 168 209 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 SMART WD40_4 262 299 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 SMART WD40_4 115 154 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 SMART WD40_4 75 112 IPR001680 GO:0005515(InterPro)
Hepe07g2098 469 PANTHER WD-REPEAT PROTEIN 18 5 432 IPR045227 GO:0005656(PANTHER)|GO:0006261(PANTHER)|GO:0006364(PANTHER)|GO:0097344(PANTHER)
Hepe07g2098 469 MobiDBLite consensus disorder prediction 444 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2098 K14829 - - csv:101212515 754.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1139 Hepe-Chr3:64559710 Hepe07g2098 Hepe-Chr7:65267694 3.69e-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g137 . . . . . . . . . Cmo18g00209 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma18g00325 . Car18g00223 . . Bhi08g01468 . . . Hepe07g2098 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014470 0 3 0 0 0 1 1 0 0 1 1 0 1 0 0 1 1 0 1 1 1 1 1 0 1 1 1 1 1 1 21