Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2120 ATGGACGGAGAGGAGTTGACGGAGCAGGAAACCCAATTGTATGACCGCCAAATTAGGGTTTGGGGTGCGGATGCTCAGAGGAGGCTGAGCAAAGCTCACGTTCTAGTGTGTGGAATGAAAGGGGCTGTTGCTGAGTTTTGCAAGAATATCGTTCTTGCTGGGGTTGGTAGTTTGACATTGGTGGATAATCGGTTGGTGACTGAAGAAGCACTTTCTGCTAACTTTCTACTACCTTCTGATGAGGGTGTTTTTGGCGGGAAAACTGTTGCTGAGCTTTGCTGTGATTCTTTGAAAGATTTCAATCCTATGGTACGAGTTTCAGTCGACAGAGGTGAATTGTCGAGCTTTGATGAAGAGTTTTTGAAGATATTTGATGTTATAGTTGTCAGCTGTTGCTCCCTGGCTGAAAAGAAATCAGTCAATGAGAAATGCCGGAAGTTACCCAAGCGCATAGCATTTTATAGCGTTGACTGTAGAGATTCATGTGGTGAAATATTTGTTGATCTACAAGACTATAAATATGCAAAGAAAAAACTTGAGGACACTGTGGAATGCCAACTATCATATTCAAGCTTTGAGGAAGCAATTTCGGTACCCTGGAAAGCACATCCCAGAAAAGTATCAAAGCTATTTTATGCATTGAGAGTCATAGAACGGTTTGAAGAGGCCGAAGGGCGAAATCCAGGAGAGACTACAATATCCGATCTTCCCGGGGTTTTGAAATTGAAAAAGGAGCTCTGTGAGTCACAGTCACTGAATGAAGCTCAGATTCCCAATGCACTCCTAGAGAGATTGGTGACAAATTCAAAGGAATTTCCTCCTGTTTGTGCTATCATTGGAGGAATTCTTGGGCAGGAAGTAATTAAAGCTATATCTGGGAAAGGAGATCCCCTCAAGAACTTCTTCTACTTCGATGCTGTTGATGGGAAGGGTATCATAGAGGACATATCTAGCAAACCCTAA 963 42.78 MDGEELTEQETQLYDRQIRVWGADAQRRLSKAHVLVCGMKGAVAEFCKNIVLAGVGSLTLVDNRLVTEEALSANFLLPSDEGVFGGKTVAELCCDSLKDFNPMVRVSVDRGELSSFDEEFLKIFDVIVVSCCSLAEKKSVNEKCRKLPKRIAFYSVDCRDSCGEIFVDLQDYKYAKKKLEDTVECQLSYSSFEEAISVPWKAHPRKVSKLFYALRVIERFEEAEGRNPGETTISDLPGVLKLKKELCESQSLNEAQIPNALLERLVTNSKEFPPVCAIIGGILGQEVIKAISGKGDPLKNFFYFDAVDGKGIIEDISSKP 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 65531127 65534760 + Hsped.07g21200.1 Hepe07g2120 575515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2120 320 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 7 304 IPR045886 GO:0005737(PANTHER)|GO:0016925(PANTHER)|GO:0019948(PANTHER)|GO:0031510(PANTHER)|GO:0032446(PANTHER)
Hepe07g2120 320 Pfam ThiF family 14 308 IPR000594 -
Hepe07g2120 320 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 315 IPR035985 GO:0008641(InterPro)
Hepe07g2120 320 Gene3D - 1 319 - -
Hepe07g2120 320 FunFam SUMO-activating enzyme subunit 1B-2 1 318 - -
Hepe07g2120 320 CDD Aos1_SUMO 13 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2120 K10684 - - csv:101222333 594.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2120 Hepe-Chr7:65531127 Hepe08g0708 Hepe-Chr8:6364952 6.42e-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g98 . . . . . Bpe13g00197 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01591 . . . . . . . . . . . . . . Bhi08g01510 Tan05g2983 . Lac10g0595 Hepe07g2120 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004029 1 5 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 5 1 44