Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2148 ATGAGCCGAAAGCCACGTGGAGCCGTTGAAATTGGGCCATTCCTTTTGGGCCTCCAGCCCACTAGAAACTGGGAAACTAAGATCAAGATCGGAATCAACGGATTCGGAAGAATCGGAAGGTTGGTTGCTAGAGTTGCTTTACAAAGAGACGATGTGGAACTCGTTGCTATTAATGATCCTTTCATCACAACTGATTACATGACATACATGTTCAAGTACGACAGTGTTCATGGTCAATGGAAGCACAATGACGTGAAGGTGAAGGACGCTAAAACCCTTCTCTTCGGTGAGAAGGCCGTCACTGTTTTTGGTGTCAGAAACCCAGAGGAGATCCCATGGGGTGAGACCGGAGCGGATTACGTTGTAGAGTCCACTGGTGTTTTCACTGACAAGGATAAAGCTGCTGCTCATTTGAAGGGTGGTGCTAAGAAGGTTATCATCTCTGCCCCCAGCAAGGATGCCCCCATGTTTGTTGTAGGAGTCAACGAGAAGGAATACAAGCCAGAACTTGACGTTATTTCTAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTGCAAAGGTTATCAATGACAGATTTGGCATTGTTGAGGGTCTGATGACCACTGTTCACTCAATCACTGCCACACAAAAGACTGTTGATGGGCCATCTAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCTAAGGCCGTCGGCAAAGTCCTCCCTGCTTTGAACGGGAAATTGACCGGAATGTCTTTCCGTGTTCCTACTGTCGATGTCTCTGTCGTTGATCTTACAGTGAGGTTGGAAAAGAAGGCTACTTATGAGGATATCAAGGCAGCGATCAAGGAAGAGTCCGAGGGAAAATTGAAGGGAATTTTGGGCTACACTGAAGATGATGTCGTGTCCTCTGACTTTGTTGGTGACACCAGGTCAAGCATCTTCGATGCCAAGGCCGGAATTGCATTGAACGATAACTTTGTGAAGATCGTCTCGTGGTACGACAATGAAGTAGGATACAGTTCTCGTGTCATTGACTTGATTGTCCATGTCGCATCCACCAAGTAA 1086 47.15 MSRKPRGAVEIGPFLLGLQPTRNWETKIKIGINGFGRIGRLVARVALQRDDVELVAINDPFITTDYMTYMFKYDSVHGQWKHNDVKVKDAKTLLFGEKAVTVFGVRNPEEIPWGETGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELDVISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYEDIKAAIKEESEGKLKGILGYTEDDVVSSDFVGDTRSSIFDAKAGIALNDNFVKIVSWYDNEVGYSSRVIDLIVHVASTK 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 65760514 65763281 - Hsped.07g21480.1 Hepe07g2148 575543

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2148 361 FunFam Glyceraldehyde-3-phosphate dehydrogenase 28 188 - -
Hepe07g2148 361 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 28 131 IPR020828 GO:0051287(InterPro)
Hepe07g2148 361 Gene3D Dihydrodipicolinate Reductase; domain 2 177 342 - -
Hepe07g2148 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 27 194 IPR036291 -
Hepe07g2148 361 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 183 340 IPR020829 GO:0016620(InterPro)
Hepe07g2148 361 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 177 340 - -
Hepe07g2148 361 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 29 352 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Hepe07g2148 361 PIRSF GAPDH 26 361 IPR020831 GO:0016620(InterPro)
Hepe07g2148 361 FunFam Glyceraldehyde-3-phosphate dehydrogenase 177 342 - -
Hepe07g2148 361 Gene3D - 28 355 - -
Hepe07g2148 361 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 24 359 IPR020831 GO:0004365(PANTHER)|GO:0005829(PANTHER)|GO:0006096(PANTHER)|GO:0016620(InterPro)
Hepe07g2148 361 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 176 183 IPR020830 GO:0016620(InterPro)
Hepe07g2148 361 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 256 273 IPR020831 GO:0016620(InterPro)
Hepe07g2148 361 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 172 190 IPR020831 GO:0016620(InterPro)
Hepe07g2148 361 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 137 150 IPR020831 GO:0016620(InterPro)
Hepe07g2148 361 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 199 215 IPR020831 GO:0016620(InterPro)
Hepe07g2148 361 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 296 311 IPR020831 GO:0016620(InterPro)
Hepe07g2148 361 SMART gp_dh_n_7 28 178 IPR020828 GO:0051287(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2148 K00134 - - csv:101213074 629.787
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0014 Hepe-Chr2:289718 Hepe07g2148 Hepe-Chr7:65760514 8.84e-173 dispersed
Hepe02g3372 Hepe-Chr2:83247353 Hepe07g2148 Hepe-Chr7:65760514 2.09e-196 dispersed
Hepe07g2148 Hepe-Chr7:65760514 Hepe08g0647 Hepe-Chr8:5772166 1.17e-166 dispersed
Hepe07g2147 Hepe-Chr7:65755180 Hepe07g2148 Hepe-Chr7:65760514 6.72e-218 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001932 1 3 2 4 3 1 2 1 1 3 1 1 3 3 3 4 1 3 2 1 3 3 3 1 1 3 2 2 3 3 67