Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2164 ATGGCCGCTGCGGAGCCGTCGCAAGAGGTACTTTCTTGGCTCAAAACCCTACCTTTGGCTCCTGAATATCACCCGAGTTTGGCAGAGTTTCAAGATCCAATTTCATACATTTTTAAGATCGAGAAAGAGGCTTCCAAGTTTGGAATCTGCAAAATTGTGCCCCCTGTACTTCCTTCACCGAAGAAAACTGTAATTGTCAATTTCAATAAGTCGCTTGCAGCTCGTCGTGCTCCCTGTTCTTCTAACTCGACTAATTCCAAGTCTCCGCCTACATTCACAACTCGCCAGCAGCAGATCGGGTTTTGCCCGAGGAAAACACGGCCGGTTCAGAAATCAGTGTGGCAGAGCGGTGAGTACTACACGTTTCAGCAATTTGAGGCGAAGGCGAAGGGGTTTGAGAAGAGTTATTTGAAGAAATGTGCGAAGAAAGGAGGAGGAGGAGGAGGAGGAGCAGGGCTTTCTCCTTTGGAAATCGAGACGCTGTATTGGAGGGCAACTTTGGACAAGCCGTTTTCTGTGGAATATGCGAATGATATGCCTGGTTCTGCGTTTGTGCCTGTGAGTGCAAAGATGTTTAGGGAGGCAGGGGAAGGGACGACGCTTGGTGAAACTGCGTGGAACATGAGGGGAGTGTCTAGGGCGAAAGGGTCTCTGTTGAGGTTTATGAAGGAAGAGATTCCAGGAGTTACTTCGCCAATGGTGTATGTTGCTATGATGTTCAGTTGGTTTGCTTGGCATGTTGAAGACCATGATTTGCATAGCTTGAATTATCTGCATATGGGGGCGGGAAAAACATGGTATGGCGTGCCTAGAGATGCTGCTGTGGCGTTTGAGGAGGTTATTAGGGTTCAGGGATACGGCGGAGAAATTAATCCCCTTGTTACTTTTTCTGTTCTTGGTGAGAAGACCACTGTGATGTCACCTGAAGTTTTAGTCAGCGCTGGAGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGTGAATTTGTTGTCACTTTTCCTCGAGCTTATCATACAGGTTTCAGCCATGGATTTAACTGTGGGGAGGCAGCCAATATTGCAACTCCAGAATGGTTAAGGGTTGCTAAAGAGGCTGCAATTCGTAGAGCTTCAATCAATTATCCTCCAATGGTCTCTCATTTTCAGTTGCTATATGATCTTGCTCTAAGTTCCAGAGCACCTCTTTGCAATGGTGCTGAACCAAGAAGTTCACGACTAAAAGATAAAAGGAGGAGTGAAGGGGAAACAGTTGTAAAAGAGTTATTTGTACAGAATATTGTAGAGAATAACAGCCTGCTGGACATTCTCGGAAGGGGAGCTTCAGTTGTACTTCTTCCCCAAGGTTCTTCAGATTCTATTTATTCGAGACTGCGCGTTGGATCCCACTTGAGAGCAAAACCTAGATTTCCTGCTGGTTTTTGCAATTCTAAGGAAGAAGCCAAATCTCCGCAAAGTTTTGATTATGATAATCTCACACTAGAAAACAGCCAGGGAATGAATCGAGTTAAAGGTTTCTATTCAGCTGACGGACTATATTCTACTCTATCTGAGAGAAGCACGGGTAATTTATGTGCTTCAAGTTCAAGGACTTTGAATGCCAACAATGAACGAGGTGGTAGTGTTCATTGCGATGGATTATCAGACCAAAGACTGTTTTCTTGTGTCACGTGTGGTATTTTAAGCTTTGCCTGTGTAGCCATCGTCCAACCCAGAGAAGAAGCTGCTAGGTACCTAATGTCAGCTGACTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGGATAACCGGTGAAGGGATTGCTATTAGAGACGGGCATGCTGTTACTTCTCAGCAGATTAGTATTAGTGGAAGAAGAGAGAAGCGTGTCTCTGATGGTTTGTATGACGTCCCAGTCCAGGCTGTCAATCGCCAGCTTTCGGTAGCAGATCAAAGTTATGAAGCTAATTTAAATAATAAAAAACGGAATGAGACTTCTGCCCTTGGCATGCTCGCATTGACTTATGGACAGTCTTCTGATTCTGAGGAGGATAATGCTGAAGCAGATGCTGCTCTAAATGCCGAGGATGCTAAACTAATGATCTGTTCTTCAGAAGACCAATATCAGTTCGAGAATTCTGGTCTTACTTCTAGTGAATATTGTAAAAACAGTGCAACTTCGAATCATGACCGATCATCATTTGGTGTTAACACTGCAGATCAAATGCACTTTCAAGTCAATGACTACGAAGAATTTGGACGAGGTAGATTTGATTCCAAAGATGCATTCAATTGTTCTTCTGAGTTTGAAGTTGATGGCATAGGTTCAACTAAGAGAAATGGCTTGTCAACTAGATATCAAGATTCACATGTGAATGACAAATCTTACTTGGATGCTGATACTGATAAGTCCACTGAAGCAGTGGAGATTGAGAATATGCCATTTTCTCCTGATATCGATGAAGACTCCTCTAGGTTGCATGTATTCTGTCTAGAGCATGCCAAAGAAGTGGAACAACAACTTCGCCCAATTGGAGGAGTGCATATTCTTTTACTTTGTCATCCAGACTATCCGAAGATGGAGGCAGAAGCAAAATTGGCGGCACAAGAATTAAGTATTGACCATCTGTGGACTGATACGATGTTCAGAGGTGCCGCCCAAGATGAAGAAAAGAAAATTCAGTTAGCTTTAGACAGCGAGGACGCAATTCCGGGTAATGGAGATTGGGCTGTAAAGTTGGGAATTAATCTCTTTTATAGTGCCAACCTTAGTCACTCTCCTCTTTACAGTAAGCAGATGCCATACAACTCTGTTATTTATAATGCGTTTGGTCGTAGTACTTCTGCTAACTCTTCCAGTAAGCCAAAAGTCTATCAAAGGAGGAGTGGCAAGCTGAAAAGGGTAGTTGCAGGGAAATGGTGTGGGAAAGTCTGGATGTCGAATCAAGTTCATCCTTTGCTAGCAAAGAGAGATCCTCAAGAAGAAGATGTAGAGATGTTCCATTCTTGGACAATGTCAGATGAGAAGGTTGATAGGAAATCAGAAAATATCCAGAAAAATGAGACTGGTGCGGTAAATAGAAAATCTGCTGGCAAGAGAAAAATGGCTTATGGAAGCGGGACGACTAAGAAAGCCAAACCTATAGAGCCAGAGGACATGGTTTCAGATGATTCGGTTGAAGATTGTATTCATCAGCATCATAGGATTCTACGAAACAAGCGATCTAAATTTGTTGAGAGCAATGATGGTATGTCGGATGATTCTGTGGAGGATGATTCTCATAAAAAACGTGGAGGAGTTCCCATCAGCAGGGGAGTGCCATATTGTGGGACAGATGACACCGGTTCCGATGGTTCTCTCGAAGATCGTCATAATCTGCAGCACAGAGGGTTCTCTGGATTCAAGCTGCCCAAATGGGGTGAGATAATAGAACCTGCAGTCTCTGACGATTCCTTAGAGTACCATTCTTCTCAGCATTGCGGGAAAAAGAGTAAAAGCAAGATGGAAAGATATATCGAGAGACAAGATGCACTTTCCGATGAAGAGCGTCTGGAGAGTGATTCTATTAAGCAATATAATAGAAGGATTCCGAGAAACAAGCAAACCAAAGTTCTGACAAAGAATGCCCTTTCACATGATATACGGGATGATAGTTTTCTTTGGCATCATCAAAAGCCTTCTAGAAGCAAGATGGCCAAATCTTTTGAGAGTGAAGATGCAGTTTCAGAGGATTCCCTAGAAAATAATTCTCATCAGCATAGAAGTATGCCTCAAAGAAAACCCGCCAAACGCACTGCGAGGGAAGATGCATTTTCAGATGATCCAGACGAAGATGATAACTCTCTTGTGCAGCATAGGAAAATTAGAAGAAACGTGCCATCCAAATTCATTGAGAGAGAAAATACATCAGATGACCAACTTGAGGATAGTGCTAATCAGTCCAGGAGGAGGATACTCCGAAGTAAGCCAGTCAAGACAGAGACCCTTTCCCAAATGAAACAAGAGATCCTGCGACCTGCGAAGCGGGGAGCATCTCAGACTTTGAAAGAAGAATTCTCTCAATCTCTAAGACGTGGAGGCCGCCATCCCTTAAAATTAGAGACACCTCAGCCAACAAAACAACATGCCACAAATCAGCGCGGTAAGCAAGCTAAGAAGAATAGTAAATTGACAGATATAGAATCAGAGGAAGAGCAACCAGGTGGACCTAGCTCACGTCTTAGAAAAAGAACTCCAAAGCCTACTAAACTTTCAGAAGCGAAACTGAAAGATAAAAAACCAATTGTTAAGAAAAAGGCGAAGAATGCCTCGTCTTTGAAGACTCCAGCAGGCCATAGAGATTCAAAAGCAAGGGATGAGGAATCAGAATATCTTTGCGATATCGAGGGTTGCAATATGAGTTTTGGTTCAAAACAAGAACTTGCCTTGCACAAACGAAATATTTGTCCTGTCAAGGGATGTGGAAAGAAGTTTTTCTCGCACAAGTACCTTGTGCAGCATCGTCGAGTACACATGGACGATCGTCCCCTCAAATGTCCATGGAAGGGCTGCAAGATGACTTTCAAATGGGCATGGGCACGAACCGAACATATTCGTGTTCATACAGGTGCCCGACCCTATGTTTGTGCTGAACCAGGATGTGGTCAGACATTCAGATTCGTGTCGGATTTCAGTCGTCACAAGCGAAAGACTGGACATTCAACAAAGAAAGGTAGAGGTTAA 4698 43.44 MAAAEPSQEVLSWLKTLPLAPEYHPSLAEFQDPISYIFKIEKEASKFGICKIVPPVLPSPKKTVIVNFNKSLAARRAPCSSNSTNSKSPPTFTTRQQQIGFCPRKTRPVQKSVWQSGEYYTFQQFEAKAKGFEKSYLKKCAKKGGGGGGGAGLSPLEIETLYWRATLDKPFSVEYANDMPGSAFVPVSAKMFREAGEGTTLGETAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYVAMMFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVIRVQGYGGEINPLVTFSVLGEKTTVMSPEVLVSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKEAAIRRASINYPPMVSHFQLLYDLALSSRAPLCNGAEPRSSRLKDKRRSEGETVVKELFVQNIVENNSLLDILGRGASVVLLPQGSSDSIYSRLRVGSHLRAKPRFPAGFCNSKEEAKSPQSFDYDNLTLENSQGMNRVKGFYSADGLYSTLSERSTGNLCASSSRTLNANNERGGSVHCDGLSDQRLFSCVTCGILSFACVAIVQPREEAARYLMSADCSFFNDWVVGSGITGEGIAIRDGHAVTSQQISISGRREKRVSDGLYDVPVQAVNRQLSVADQSYEANLNNKKRNETSALGMLALTYGQSSDSEEDNAEADAALNAEDAKLMICSSEDQYQFENSGLTSSEYCKNSATSNHDRSSFGVNTADQMHFQVNDYEEFGRGRFDSKDAFNCSSEFEVDGIGSTKRNGLSTRYQDSHVNDKSYLDADTDKSTEAVEIENMPFSPDIDEDSSRLHVFCLEHAKEVEQQLRPIGGVHILLLCHPDYPKMEAEAKLAAQELSIDHLWTDTMFRGAAQDEEKKIQLALDSEDAIPGNGDWAVKLGINLFYSANLSHSPLYSKQMPYNSVIYNAFGRSTSANSSSKPKVYQRRSGKLKRVVAGKWCGKVWMSNQVHPLLAKRDPQEEDVEMFHSWTMSDEKVDRKSENIQKNETGAVNRKSAGKRKMAYGSGTTKKAKPIEPEDMVSDDSVEDCIHQHHRILRNKRSKFVESNDGMSDDSVEDDSHKKRGGVPISRGVPYCGTDDTGSDGSLEDRHNLQHRGFSGFKLPKWGEIIEPAVSDDSLEYHSSQHCGKKSKSKMERYIERQDALSDEERLESDSIKQYNRRIPRNKQTKVLTKNALSHDIRDDSFLWHHQKPSRSKMAKSFESEDAVSEDSLENNSHQHRSMPQRKPAKRTAREDAFSDDPDEDDNSLVQHRKIRRNVPSKFIERENTSDDQLEDSANQSRRRILRSKPVKTETLSQMKQEILRPAKRGASQTLKEEFSQSLRRGGRHPLKLETPQPTKQHATNQRGKQAKKNSKLTDIESEEEQPGGPSSRLRKRTPKPTKLSEAKLKDKKPIVKKKAKNASSLKTPAGHRDSKARDEESEYLCDIEGCNMSFGSKQELALHKRNICPVKGCGKKFFSHKYLVQHRRVHMDDRPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKGRG 1565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 65872869 65881193 - Hsped.07g21640.1 Hepe07g2164 575559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2164 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1504 1526 IPR013087 -
Hepe07g2164 1565 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Hepe07g2164 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1472 1501 IPR013087 -
Hepe07g2164 1565 FunFam Probable lysine-specific demethylase ELF6 1499 1528 - -
Hepe07g2164 1565 FunFam Probable lysine-specific demethylase ELF6 13 373 - -
Hepe07g2164 1565 ProSiteProfiles JmjC domain profile. 203 369 IPR003347 -
Hepe07g2164 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1532 1563 IPR013087 -
Hepe07g2164 1565 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 1318 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Hepe07g2164 1565 Gene3D Classic Zinc Finger 1470 1556 - -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1217 1246 - -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1404 1418 - -
Hepe07g2164 1565 FunFam Probable lysine-specific demethylase ELF6 1529 1558 - -
Hepe07g2164 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1474 1496 IPR013087 -
Hepe07g2164 1565 SMART c2h2final6 1449 1471 IPR013087 -
Hepe07g2164 1565 SMART c2h2final6 1472 1496 IPR013087 -
Hepe07g2164 1565 SMART c2h2final6 1502 1526 IPR013087 -
Hepe07g2164 1565 SMART c2h2final6 1532 1558 IPR013087 -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1377 1396 - -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1071 1091 - -
Hepe07g2164 1565 Pfam JmjC domain, hydroxylase 234 351 IPR003347 -
Hepe07g2164 1565 ProSitePatterns Zinc finger C2H2 type domain signature. 1534 1558 IPR013087 -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1071 1101 - -
Hepe07g2164 1565 Gene3D Cupin 13 373 - -
Hepe07g2164 1565 SUPERFAMILY Clavaminate synthase-like 214 381 - -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1362 1376 - -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1217 1444 - -
Hepe07g2164 1565 ProSiteProfiles Zinc finger C2H2 type domain profile. 1502 1531 IPR013087 -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1270 1315 - -
Hepe07g2164 1565 Pfam jmjN domain 21 54 IPR003349 -
Hepe07g2164 1565 SUPERFAMILY beta-beta-alpha zinc fingers 1520 1554 IPR036236 -
Hepe07g2164 1565 SUPERFAMILY beta-beta-alpha zinc fingers 1488 1530 IPR036236 -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 77 96 - -
Hepe07g2164 1565 SMART JmjN_1 19 60 IPR003349 -
Hepe07g2164 1565 MobiDBLite consensus disorder prediction 1019 1040 - -
Hepe07g2164 1565 SMART cupin_9 200 369 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2164 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2946 Hepe-Chr2:78701741 Hepe07g2164 Hepe-Chr7:65872869 1.04e-130 dispersed
Hepe07g2164 Hepe-Chr7:65872869 Hepe08g1106 Hepe-Chr8:10956706 8.07e-62 dispersed
Hepe07g2164 Hepe-Chr7:65872869 Hepe06g0994 Hepe-Chr6:57719690 2.72e-71 transposed
Hepe07g2164 Hepe-Chr7:65872869 Hepe06g1798 Hepe-Chr6:69039145 1.10e-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g892 . . . . . . . . . Cmo18g00183 . . . . . Cpe20g00334 . . . . . . . . . . . . . . . Cone2ag0949 Cone16ag0052 . . Lsi02g00464 Csa01g00920 Chy12g01206 Cme12g01627 . . . . Bpe07g00876 . . . Sed08g2466 . . . Cma18g00207 Car13g00624 Car18g00201 Cpe09g00989 . Bhi08g01693 Tan05g2897 Cmetu10g1062 Lac10g0536 Hepe07g2164 . . Cla03g00321 Cam03g0337 Cec03g0329 Cco03g0343 Clacu03g0339 Cmu03g0945 Cre03g0638 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008005 0 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56027 PF02373 JmjC 1.60E-36 CL0029 Hepe TF