Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2170 ATGGCACCGCCAACACTCCTCTTTCTCTCTCTCCTCTCCCTCTTCCTCCTCTCCGCCACCCTCTCCGCCTCCTCTGCCGCCGTGCAGAATCCCGAACTCGTCGTTGAAGAAGTACACAGGAGCATAATCAACGCAACAAAGAGGAGGAATCTGGGTTACCTCTCCTGCGGTACCGGAAACCCAATCGACGATTGCTGGCGGTGCGATTCCAATTGGGAGAAGAATCGCCAACGACTCGCCGACTGCGGAATCGGCTTCGGCAAAAACGCAATCGGCGGCCGCGACGGCAAAATCTACGTCGTCACCGACGCCGGCGACGACGACCCAGTCAATCCCAAGCCAGGAACTCTCCGTTACGCCGTAATCCAAGACGAACCCCTCTGGATCATCTTCGCTCGCGACATGGTAATCCGATTAAAAGAAGAACTCATCATGAACTCCTTCAAAACCATCGACGGCCGTGGCTACAGCGTGCACATCGCCGGCGGGCCCTGCATTACGATCCAATACGTGACGAACATCATAATCCATGGACTGAACATTCACGACTGCAAGCAAGGGGGGAACACCGACGTGAGAGATTCGCCGAGGCATTTTGGATTCAGGACGATTTCGGACGGCGACGGAGTTTCGATCTTCGGCGGAAGCCATGTTTGGGTGGATCATTGCTCGTTGTCGAACTGTAACGATGGGTTGATCGACGCGATTCATGGGTCGACGGCGATTACTATTTCGAATAATTATATGACGCATCATGATAAAGTCATGTTGTTGGGACATAGTGATTCTTATACTCAAGATAAAAATATGCAAGTTACCATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCCAGATGTAGGCATGGGTATTTTCATGTAGTAAACAATGACTATACACATTGGGAAATGTACGCCATTGGAGGAAGTGCAGCCCCAACCATCAACAGTCAAGGGAACAGATTTCTTGCACCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCACCAGAGAGTGAATGGAAGAATTGGAATTGGAGATCAGAAGGAGATTTGTTGCTAAACGGTGCGTTTTTCACAGCCTCCGGCGCCGAATCCTCGTCCAGCTATGCTCGAGCGTCGAGTTTAGGGGCGAGACCGTCGTCGCTCGTCGGATCAATTACGACTTATGCGGGTGCACTCAACTGCAGAAAGGGCTCCCGCTGCTGA 1227 51.1 MAPPTLLFLSLLSLFLLSATLSASSAAVQNPELVVEEVHRSIINATKRRNLGYLSCGTGNPIDDCWRCDSNWEKNRQRLADCGIGFGKNAIGGRDGKIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGYSVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFLAPNDRFSKEVTKYEDAPESEWKNWNWRSEGDLLLNGAFFTASGAESSSSYARASSLGARPSSLVGSITTYAGALNCRKGSRC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 65960580 65962960 + Hsped.07g21700.1 Hepe07g2170 575565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2170 408 Gene3D - 59 401 IPR012334 -
Hepe07g2170 408 SMART amb_all 134 331 IPR002022 -
Hepe07g2170 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Hepe07g2170 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Hepe07g2170 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Hepe07g2170 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Hepe07g2170 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Hepe07g2170 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Hepe07g2170 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Hepe07g2170 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Hepe07g2170 408 Pfam Pectate lyase 168 325 IPR002022 -
Hepe07g2170 408 FunFam Pectate lyase 59 401 - -
Hepe07g2170 408 SUPERFAMILY Pectin lyase-like 35 403 IPR011050 -
Hepe07g2170 408 PANTHER PECTATE LYASE 18-RELATED 15 405 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2170 Hepe-Chr7:65960580 Hepe08g1574 Hepe-Chr8:22341687 9.98e-164 dispersed
Hepe10g0060 Hepe-Chr10:582201 Hepe07g2170 Hepe-Chr7:65960580 3.75e-238 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2170 K01728 - csv:101209736 768.844