Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2208 ATGCTCAAAATTTGGGTGCGGCATTTCATCAAACACCTTGTGGTCAATTTCCAACAGTTCACAGGCGCATTGGGTTTGTTTAATTGCCAAGGAGGAGGATGGTGTCCAAAGACAAGGAGAAACAGAAGGAGCTCAGAATACGCACGTACACTAACCTGCGTTGGCAGTCCAAAAGACATCGAGTGGAACAATGGGAAAAATCCCATTTCTCTGAAGGGAGTGAACTTGTTTGCCATATACACGATGAGGGAAAAGAAAGTAAAGGTGTTAAAGACATGGGAGAATTTGGAATTCTCAATCGACCCATTAAATTACGAACTGCTTGTAGTATCCCCTGTCACAGTTTTATCGAAACCTTACATGGAATTTGCTGCAATTGGGCTGGTGAACATGTTGAATTGTGGGGGTGCGATACAATCACTGGAAATTGAGGAAAATGAAGGTTTGGTAAGAATCGGAGGAAGGGGATGCGGGGAAATGAGAGTGTTCGCCACGAAGGAGCCTAGAAGCTGCAAAATTGATGGAGAAGATGTAGAGTTTGAATATGATGATGATGATAAAATGGTGAAGATTCAGGTACCTTGGCTGAGCTCTTCGAGATTGTCCATAATTGAGTATCAATTCTGA 627 42.74 MLKIWVRHFIKHLVVNFQQFTGALGLFNCQGGGWCPKTRRNRRSSEYARTLTCVGSPKDIEWNNGKNPISLKGVNLFAIYTMREKKVKVLKTWENLEFSIDPLNYELLVVSPVTVLSKPYMEFAAIGLVNMLNCGGAIQSLEIEENEGLVRIGGRGCGEMRVFATKEPRSCKIDGEDVEFEYDDDDKMVKIQVPWLSSSRLSIIEYQF 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 66467929 66468555 - Hsped.07g22080.1 Hepe07g2208 575603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2208 208 PANTHER - 14 198 IPR008811 GO:0047274(PANTHER)
Hepe07g2208 208 Pfam Raffinose synthase or seed imbibition protein Sip1 14 193 IPR008811 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2208 K06617 - - csv:101204256 339.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2208 Hepe-Chr7:66467929 Hepe10g1924 Hepe-Chr10:56068752 3.76e-22 dispersed
Hepe02g1794 Hepe-Chr2:26476529 Hepe07g2208 Hepe-Chr7:66467929 5.38e-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g798 Blo04g00725 . . . . . . . Cmo13g00901 . . . . . . Cpe20g00363 . . . . . . . . . . . . . . . Cone2ag0924 . . . Lsi02g00398 Csa01g00872 Chy12g01250 Cme12g01673 . . . Bda14g00801 . Bpe15g00647 Bma03g00775 . Sed01g1630 . . Cma13g00869 . Car13g00712 . . . Bhi08g01647 Tan05g1982 Cmetu04g0654 Lac10g0478 Hepe07g2208 . . Cla01g01320 Cam01g1410 Cec01g1441 Cco01g1484 Clacu01g1385 Cmu01g1294 Cre01g1247 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001782 1 2 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 2 2 4 3 2 69