Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2232 ATGGCTGTGTGTTTTACTTTCTTCATTCAGGTTGATTATACCTCTGTGTTTGCTTTTCGCTTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTGGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGGGTTGTGGTTCTTTCTATTCTCTCTGTATTGCTCTACCCGTTTTTATGTGCGTGGACTGTAATTGGTACCCTATGGTTTAGAGATGCTAAAGACTGTTTGCCCGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTTCATGTCAGTGGGAAAGTGGTTAGCGCGTAGACAAGCACACTTGTTCCGTGCCCAACAAGGCATACCCGTATCAGAATATGGGGTATTGGTTGATATGATTAGGGTTCCTGATTGGGCATTTGAAGCTGCAGGACTGGAAACACGAGGCATTGGCCAAGATGCTACTGGGTACCATCCCGGGCTTTTCTTAACTTCAGCTCAGAGGGAAGCTGTGGAAGCTCTCATTCAGGAACTTCCTAAGTTCAGGCTGAAGGCGGTCCCAACTGATTGCAGCGAATGCCCGATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTATGCCGTGTGCTCACAATTTTCATGTCGAATGTATCGACGAGTGGCTTCGTCTGAACGTTAAATGTCCTCGGTGCCGCTCCTCAGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGCCAATGGTTTCGTAACAAACCAACAACCTTCAAGTCTGTCGAGATCGGGTCCCAGCCCCGCAGCTCATACAGAAAACACAGCAGGCCTCTATACTGACACTGCCTTAGATGCAGTGGAGAATGGGAACTCACCCATGACATCTGCTTCTCGACATTGA 951 47.42 MAVCFTFFIQVDYTSVFAFRFLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSVLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIAFMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSANGFVTNQQPSSLSRSGPSPAAHTENTAGLYTDTALDAVENGNSPMTSASRH 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 66759682 66763373 - Hsped.07g22320.1 Hepe07g2232 575627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2232 316 Pfam Ring finger domain 199 241 IPR001841 -
Hepe07g2232 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 246 IPR013083 -
Hepe07g2232 316 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Hepe07g2232 316 SMART ring_2 200 240 IPR001841 -
Hepe07g2232 316 MobiDBLite consensus disorder prediction 266 290 - -
Hepe07g2232 316 FunFam E3 ubiquitin-protein ligase SIS3 168 246 - -
Hepe07g2232 316 SUPERFAMILY RING/U-box 181 249 - -
Hepe07g2232 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 6 313 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2232 Hepe-Chr7:66759682 Hepe09g0621 Hepe-Chr9:5776749 1.69e-09 dispersed
Hepe07g2232 Hepe-Chr7:66759682 Hepe09g0195 Hepe-Chr9:1548748 1.16e-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2232 K16284 - csv:101222360 581.637