Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2243 ATGGTAGGTAGGTACCACTACCATGAAACCTCCTTCAGCTTAACATTCTCTTTCGACTTTTTTCACTCAAAAAGCAGAAAGTATCATCCATTATTGAGTATTATATCTCCTGAGATGTCAAGATTTTCAAATGAAATGAAGCAAAAAGATGGTAATCTGATATACCCATCTCCTCTTTCGCCTTTTGATGGTGGCACTGATCCACAATCAAATGATTCAACACCATCATCGTCATCATCATCTTCTTTCAGCAGCATCAGCCCAATTCTTCTTCTAGTTATAGTAATTCTAGCAGTCATCTTCTTCATCTCTGGTTTACTCCATTTGCTCGTTCGATTTCTGCTAAAAAGATCTTCCCCATCAATCTACCACCATTCCAATCGATACCCAGAAAGGCCTGGATCACACACACTCCAAAGACAGCTCCAGCAGCTCTTTCGCCTGCACGATTCGGGCCTGGATCAATCCTTCATCGACGCTTTGCCAGTGTTCTTGTACAAAGAAATTATGGGTTTGAAAGAGCCGTTCGATTGCGCCGTTTGTCTCTACGAATTTTCCGATCACGACAGGCTGAGATTGCTCCCAATCTGCAGCCATGCTTTTCACATCAATTGCATAGACACATGGCTGCTCTCGAATTCCACTTGCCCTCTCTGCAGAGCCTCCCTACTTTCGGGCTCTAATTTACCCCTCGAAAACCCTAATTTCAACGAGATTTTAGGGCAAGAAAACGCAGTAACAACAATGGAGGAATCTGCAGGGGAAAAGAGAGTCTTCTCCGTGAGACTCGGGAAGTTCAAGAAAGTAAACAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAATAGAAGAGAAAGGGGAGAGCAGTAACCTAAACGAGAGAAGATGTTACTCAATGGGAACTTACCAATACGTTGTTGGAGATTCAGATTTGCAGGTGATGAAGGAGAAATTAAACCATGAAAATGGAGAAATGGAAGGAAAGAAAATCAGTGGGAGAAGTAAAGGGGAAAGTTTCTCGGTGTCGAAGATTTGGCAATGGTCGAAGAAGAGTGGGTTGCCGATTCCGAGCAGCTCGAACAATCAATGGAAGCCGGAATTTGTCTGA 1116 42.92 MVGRYHYHETSFSLTFSFDFFHSKSRKYHPLLSIISPEMSRFSNEMKQKDGNLIYPSPLSPFDGGTDPQSNDSTPSSSSSSSFSSISPILLLVIVILAVIFFISGLLHLLVRFLLKRSSPSIYHHSNRYPERPGSHTLQRQLQQLFRLHDSGLDQSFIDALPVFLYKEIMGLKEPFDCAVCLYEFSDHDRLRLLPICSHAFHINCIDTWLLSNSTCPLCRASLLSGSNLPLENPNFNEILGQENAVTTMEESAGEKRVFSVRLGKFKKVNNEEEEEEEEEDEEEIEEKGESSNLNERRCYSMGTYQYVVGDSDLQVMKEKLNHENGEMEGKKISGRSKGESFSVSKIWQWSKKSGLPIPSSSNNQWKPEFV 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 66828032 66829367 - Hsped.07g22430.1 Hepe07g2243 575638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2243 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 226 IPR013083 -
Hepe07g2243 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 80 353 - GO:0031625(PANTHER)
Hepe07g2243 371 Coils Coil 263 291 - -
Hepe07g2243 371 MobiDBLite consensus disorder prediction 273 289 - -
Hepe07g2243 371 SMART ring_2 178 219 IPR001841 -
Hepe07g2243 371 FunFam RING-H2 finger protein ATL46 140 225 - -
Hepe07g2243 371 SUPERFAMILY RING/U-box 157 225 - -
Hepe07g2243 371 ProSiteProfiles Zinc finger RING-type profile. 178 220 IPR001841 -
Hepe07g2243 371 CDD RING-H2_EL5-like 177 220 - -
Hepe07g2243 371 MobiDBLite consensus disorder prediction 321 341 - -
Hepe07g2243 371 MobiDBLite consensus disorder prediction 321 336 - -
Hepe07g2243 371 MobiDBLite consensus disorder prediction 270 293 - -
Hepe07g2243 371 Pfam Ring finger domain 177 220 IPR001841 -
Hepe07g2243 371 MobiDBLite consensus disorder prediction 64 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2243 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2243 Hepe-Chr7:66828032 Hepe08g2168 Hepe-Chr8:60952426 1.26e-48 dispersed
Hepe07g2236 Hepe-Chr7:66793727 Hepe07g2243 Hepe-Chr7:66828032 3.06e-15 proximal
Hepe09g0621 Hepe-Chr9:5776749 Hepe07g2243 Hepe-Chr7:66828032 5.36e-12 transposed
Hepe10g1657 Hepe-Chr10:53265202 Hepe07g2243 Hepe-Chr7:66828032 1.67e-87 wgd
Hepe02g3117 Hepe-Chr2:80329700 Hepe07g2243 Hepe-Chr7:66828032 1.69e-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0138 Cone16ag0916 Lsi02g00357 Csa01g00833 Chy12g01285 Cme12g01710 . . . . . . . . Sed08g2492 . . . Cma18g00156 . Car18g00149 Cpe09g01038 . Bhi08g01585 Tan05g2030 Cmetu12g1860 Lac10g0429 Hepe07g2243 . . Cla01g01388 Cam01g1447 Cec01g1483 . Clacu01g1470 Cmu01g1365 Cre01g1282 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013813 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 0 25