Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2250 ATGGTTGGCCATGGCAATCACAGATTGAAACTCTCAATCTTCCACCACCGATCTTCCTCAGACAACAACAAATCCGAACCCCCAAAAGACTATCCAGAAGAATACCTCTGTGGAATTTCCAAGTCGTTAATGGCGGACCCTGTTGTCGTCTCTTCCGGTCACACCTTCGAGCGCCTCTCTGTTCAAGTTTGTCAAGATTTGGGGTTTTCTCCCACGCTTGAAGATGGATCCATCGCGGATTTCTCCTCTGTTATTACCAACAGAAACATGAAATTCACTATTCTCAAATGGTGCGATAGTAATGGAATCGAACACCCACAATCGCCGGATTATAGGTCGATTGAGATGATTGTTCGTCAATTAATGGAGAAGGAAAAGCACGAGAATCGATTTGAGGTTTCTGATAGCGAGTTGTTGAGAGGCGTCGCTGATAAACCGCCGGGAGTTGCTGCAGTTCACGCCACGACGGAGGTTGGGCTTCGAGTTAACCGATTTCAACTCAACTCGCTGCCGCAGACGGAGGAGGTCGTTCGTCAAAGTACTATTTTGCCCTTCAAAATGCAACCCTCTTCTTATTCTTCTTCTTCTTCTTCATATGGAGAGCCGAATCACAGAGGAGATTTATATTATTCTGCAAATTCAGAAGAGGAATCTCGTCTGATCTCGAAATTGAGAAGCGTTGATGAATTCGAGCAACAAGAAGGAGTGATTTCCTTGAGAAAATTAACCAAATCCAACGAATCGATTAGGGCTTTGTTATGCACGAAGGAATTACTCGCCGCTTTACTTCCTCTGATTTCATCCCGATCTACAAATCTCCAAATCAACGCCGTGGCTTCCGTCGTGAATCTCTCTCTCGAGAAATCGAACAAATTGAAGATCGTACGGGGAGGATTCGTTCCGCCATTAATCGACGTTTTAGACGGCGGATCCATCGAATCGCAAGAACACGCCGCCGGTGCTTTGTTCAGTCTATCGTTAGACGACGAGAACAAAATGGCGATTGGAATACTCGGCGCGTTACCGGTGTTGATGAACACGCTCAGATCGGAAAGCGAGAGGACGAGGAACGATTCAGCGCTTTGTCTATACCATTTGACTCTAAACCCTAGCAATCGAGTCAAACTAGTGAAACTCGGCGCCGTTCCGATTCTGCTTTCGTTGACGAAGATCGAAGGCTCTGCGAGCCGAATACTGCTGATTCTGTGCAATATCGCGGTCGGTGCGGACGGGAGATCGGCGATGCTGGATGCGAATGCGGTGGGGTGTTTGGTCGGAATGTTGAAGGAGAAGGAGATGGAATCGGAGTCGACTCGGGAGAATTGTGTGGTGGCGCTTTACGCACTGAGTCAAGGAGGATTCCGATTCAGAGGATTGGCGAAGGAGGCCGGCGCGGTGGAGGTTCTCAGAGAGGTTGAAGAAAGGGGAAGCGAGAGAGCGAGGGAGAAAGCCAAGAGGATTTTGCAGATGATGAGAACCGGCGGCAATGGTTCGATTGAGATTGAACCCGGCCGACGTGGGCTCGATACCGGTGGACTCAGTTGGACCGGTCGGGCTGGTACTGGCTTGAACCGGTACTCTACAAATACCACTAAGTTTTGA 1602 48.75 MVGHGNHRLKLSIFHHRSSSDNNKSEPPKDYPEEYLCGISKSLMADPVVVSSGHTFERLSVQVCQDLGFSPTLEDGSIADFSSVITNRNMKFTILKWCDSNGIEHPQSPDYRSIEMIVRQLMEKEKHENRFEVSDSELLRGVADKPPGVAAVHATTEVGLRVNRFQLNSLPQTEEVVRQSTILPFKMQPSSYSSSSSSYGEPNHRGDLYYSANSEEESRLISKLRSVDEFEQQEGVISLRKLTKSNESIRALLCTKELLAALLPLISSRSTNLQINAVASVVNLSLEKSNKLKIVRGGFVPPLIDVLDGGSIESQEHAAGALFSLSLDDENKMAIGILGALPVLMNTLRSESERTRNDSALCLYHLTLNPSNRVKLVKLGAVPILLSLTKIEGSASRILLILCNIAVGADGRSAMLDANAVGCLVGMLKEKEMESESTRENCVVALYALSQGGFRFRGLAKEAGAVEVLREVEERGSERAREKAKRILQMMRTGGNGSIEIEPGRRGLDTGGLSWTGRAGTGLNRYSTNTTKF 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 66888200 66890363 - Hsped.07g22500.1 Hepe07g2250 575645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2250 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 339 381 IPR000225 GO:0005515(InterPro)
Hepe07g2250 533 SMART arm_5 408 451 IPR000225 GO:0005515(InterPro)
Hepe07g2250 533 SMART arm_5 369 407 IPR000225 GO:0005515(InterPro)
Hepe07g2250 533 SMART arm_5 328 368 IPR000225 GO:0005515(InterPro)
Hepe07g2250 533 SMART arm_5 287 327 IPR000225 GO:0005515(InterPro)
Hepe07g2250 533 SMART arm_5 245 286 IPR000225 GO:0005515(InterPro)
Hepe07g2250 533 Pfam U-box domain 32 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe07g2250 533 Gene3D - 213 395 IPR011989 -
Hepe07g2250 533 Gene3D - 396 495 IPR011989 -
Hepe07g2250 533 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515(InterPro)
Hepe07g2250 533 PANTHER U BOX DOMAIN-CONTAINING 21 493 - -
Hepe07g2250 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 108 IPR013083 -
Hepe07g2250 533 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe07g2250 533 SUPERFAMILY ARM repeat 220 491 IPR016024 -
Hepe07g2250 533 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe07g2250 533 SUPERFAMILY RING/U-box 16 107 - -
Hepe07g2250 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 335 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2250 Hepe-Chr7:66888200 Hepe08g0796 Hepe-Chr8:7142474 2.16e-10 dispersed
Hepe02g3127 Hepe-Chr2:80451869 Hepe07g2250 Hepe-Chr7:66888200 2.71e-93 wgd
Hepe07g2250 Hepe-Chr7:66888200 Hepe09g0170 Hepe-Chr9:1354976 3.43e-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2250 - - - 0.0