Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2253 ATGACGGCTCTCCCATCCTCTTCTGCGTTACCGGATTCTTCTTCTTCCAGGCACCATACTTACAGTAGGAAACAGAAATCACTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGACTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTATTGGAGAGCGTCGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGTTGGAATGGGTTTGGGGCAATCCCTAAGGCTTTACAAGATCTTAAAGAAGAAGGCTTGAAGGATAATTTCAGTGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGACGATGACGATGAACGGTTTTCCAATCCAAATGGAAGCCAGAACTCAACTGCTGCCGTGCCCAAATCATCTTCATCGTCGTTAAAAGCCGACAATAGAAGGGAAAAGTCATTGGCGCTCCTGACTCAAAATTTTGTTAAGCTATTTCTTTGTGGTCATGTGAATATGATTTCCCTTGATGAAGCTGCAAAGCTCTTATTAGGAGATGGCCACAATTCATCAATTATGAGAACAAAGGTAAGGCGGCTATATGACATTGCGAATGTGCTGTCTTCCATGAATTTGATTGAAAAGACCCATACAGCTGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTAAAGAATGAGCCTACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTGAGTTATAAGAAGACTAAGGTTGAAAATTCAGCCTATCAGGGTTTAAATCATTGCCTCAACACGCAAAAGCAGCTAGCGCAGTGTGAGAATTCGTCACAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGATCTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGCGTCTCAGACAATAACAATGTGAAGCGAACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGGAGAAACCCATACAAATATCTTGA 1149 43.08 MTALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNFSASDGNDYAKVSDDDDDDERFSNPNGSQNSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFLCGHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKVENSAYQGLNHCLNTQKQLAQCENSSQEDSQNSQDQECERSSKSYQFGPFAPVTVAKVGVSDNNNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVEKPIQIS 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 66935054 66938202 - Hsped.07g22530.1 Hepe07g2253 575648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2253 382 FunFam E2F transcription factor 8 18 90 - -
Hepe07g2253 382 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe07g2253 382 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe07g2253 382 MobiDBLite consensus disorder prediction 106 153 - -
Hepe07g2253 382 MobiDBLite consensus disorder prediction 131 149 - -
Hepe07g2253 382 FunFam E2F transcription factor-like E2FE 150 237 - -
Hepe07g2253 382 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Hepe07g2253 382 Gene3D - 18 91 IPR036388 -
Hepe07g2253 382 Gene3D - 150 237 IPR036388 -
Hepe07g2253 382 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe07g2253 382 Pfam E2F/DP family winged-helix DNA-binding domain 156 235 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe07g2253 382 PANTHER TRANSCRIPTION FACTOR E2F 9 357 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Hepe07g2253 382 SUPERFAMILY Winged helix DNA-binding domain 157 236 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1065 Hepe-Chr4:65315359 Hepe07g2253 Hepe-Chr7:66935054 1.82e-10 dispersed
Hepe07g2253 Hepe-Chr7:66935054 Hepe08g0198 Hepe-Chr8:1815151 7.41e-10 dispersed
Hepe07g2253 Hepe-Chr7:66935054 Hepe09g0165 Hepe-Chr9:1318445 1.06e-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56032 PF02319 E2F_TDP 7.00E-20 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2253 K09391 - csv:101219210 686.026