Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2253 ATGACGGCTCTCCCATCCTCTTCTGCGTTACCGGATTCTTCTTCTTCCAGGCACCATACTTACAGTAGGAAACAGAAATCACTTGGTCTTTTATGCTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGACTTGATGATGCCGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTATTGGAGAGCGTCGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGTTGGAATGGGTTTGGGGCAATCCCTAAGGCTTTACAAGATCTTAAAGAAGAAGGCTTGAAGGATAATTTCAGTGCATCTGATGGTAACGATTATGCAAAAGTCTCGGATGATGACGATGACGATGAACGGTTTTCCAATCCAAATGGAAGCCAGAACTCAACTGCTGCCGTGCCCAAATCATCTTCATCGTCGTTAAAAGCCGACAATAGAAGGGAAAAGTCATTGGCGCTCCTGACTCAAAATTTTGTTAAGCTATTTCTTTGTGGTCATGTGAATATGATTTCCCTTGATGAAGCTGCAAAGCTCTTATTAGGAGATGGCCACAATTCATCAATTATGAGAACAAAGGTAAGGCGGCTATATGACATTGCGAATGTGCTGTCTTCCATGAATTTGATTGAAAAGACCCATACAGCTGACACAAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGGGGTAAAGTAAAGAATGAGCCTACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTGAGTTATAAGAAGACTAAGGTTGAAAATTCAGCCTATCAGGGTTTAAATCATTGCCTCAACACGCAAAAGCAGCTAGCGCAGTGTGAGAATTCGTCACAAGAGGATAGCCAGAACAGTCAGGATCAGGAATGTGAACGATCTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGCGTCTCAGACAATAACAATGTGAAGCGAACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGGAGAAACCCATACAAATATCTTGA 1149 43.08 MTALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNFSASDGNDYAKVSDDDDDDERFSNPNGSQNSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFLCGHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTADTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKVENSAYQGLNHCLNTQKQLAQCENSSQEDSQNSQDQECERSSKSYQFGPFAPVTVAKVGVSDNNNVKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVEKPIQIS 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 66935054 66938202 - Hsped.07g22530.1 Hepe07g2253 575648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2253 382 FunFam E2F transcription factor 8 18 90 - -
Hepe07g2253 382 SMART E2F_TDP_2 23 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe07g2253 382 SMART E2F_TDP_2 155 235 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe07g2253 382 MobiDBLite consensus disorder prediction 106 153 - -
Hepe07g2253 382 MobiDBLite consensus disorder prediction 131 149 - -
Hepe07g2253 382 FunFam E2F transcription factor-like E2FE 150 237 - -
Hepe07g2253 382 SUPERFAMILY Winged helix DNA-binding domain 22 86 IPR036390 -
Hepe07g2253 382 Gene3D - 18 91 IPR036388 -
Hepe07g2253 382 Gene3D - 150 237 IPR036388 -
Hepe07g2253 382 Pfam E2F/DP family winged-helix DNA-binding domain 24 88 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe07g2253 382 Pfam E2F/DP family winged-helix DNA-binding domain 156 235 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Hepe07g2253 382 PANTHER TRANSCRIPTION FACTOR E2F 9 357 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Hepe07g2253 382 SUPERFAMILY Winged helix DNA-binding domain 157 236 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2253 K09391 - - csv:101219210 686.026
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g1065 Hepe-Chr4:65315359 Hepe07g2253 Hepe-Chr7:66935054 1.82e-10 dispersed
Hepe07g2253 Hepe-Chr7:66935054 Hepe08g0198 Hepe-Chr8:1815151 7.41e-10 dispersed
Hepe07g2253 Hepe-Chr7:66935054 Hepe09g0165 Hepe-Chr9:1318445 1.06e-122 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g2253 . 3 377 E2F-DP Transcription Factor Family AT3G48160 56.1 6.2e-101 364.8
Hepe04g1065 . 11 433 E2F-DP Transcription Factor Family AT2G36010 57.1 5.5e-120 428.3
Hepe08g0198 . 21 419 E2F-DP Transcription Factor Family AT2G36010 56.3 9.7e-117 417.5
Hepe08g0198 . 20 419 E2F-DP Transcription Factor Family AT5G22220 59.8 8.1e-113 404.4
Hepe10g0142 . 148 404 E2F-DP Transcription Factor Family AT1G47870 52.9 7.0e-65 245.0
Hepe08g0198 . 139 416 E2F-DP Transcription Factor Family AT1G47870 50.7 1.5e-62 237.3
Hepe08g0198 . 20 419 E2F-DP Transcription Factor Family AT5G22220 59.8 8.1e-113 404.4
Hepe04g1065 . 11 433 E2F-DP Transcription Factor Family AT2G36010 57.1 5.5e-120 428.3
Hepe08g0198 . 21 419 E2F-DP Transcription Factor Family AT2G36010 56.3 9.7e-117 417.5
Hepe10g0142 . 148 404 E2F-DP Transcription Factor Family AT1G47870 52.9 7.0e-65 245.0
Hepe08g0198 . 139 416 E2F-DP Transcription Factor Family AT1G47870 50.7 1.5e-62 237.3
Hepe07g2253 . 3 377 E2F-DP Transcription Factor Family AT3G48160 56.1 6.2e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56032 PF02319 E2F_TDP 7.00E-20 CL0123 Hepe TF