Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2309 ATGGAAGAAGTAGGTATGTCTGCAGTCCAAGAGAAGCTAGTTGAAATCGAACCTTCAACAAGGAATAATGATGAGTTGGTGGAAGAAGAGGAAGGAGAGGAGGAACTTTCATGGTCATCAGACTCTGAGATTGGTGATGCATTAGATTGGTTGGATGCAAAGGAAGCCTTTGAAGCAGTAGATGGGTCGTTTTCACTCAATGCTAGGCGTCCCAATGCTCATGGTGGGCTTTATTCTCGTCATAATACCTCGACTCTTCAACCTCTCTCGAACCGTAATCAAAAGTTTACCCATCACATTCGTGCGTCACCTCTTGCGGAATGGGAAGGGAGGTTTAATGTTGGAATGTCAAACTCTGTTACCGCTGCCATTCGTGACAGTGTCAAGGAAATGACTATAGGAAAAACGAAAACTACGGAGAAAGCTGATCGTGCAACTGTTGAACAGGCAATTGATCCTAGAACTCGGATGGTTTTATTCAAGATGCTCAACCGAGGTGTTTTTCATGACATTAATGGCTGCATTTCTACTGGGAAAGAAGCTAATGTCTATCATGCAACAAAATCTGATGGTAAAGAGTTCGCTGTCAAAATCTACAAAACTTCAGTTTTGGTGTTTAAGGATAGGGATCGCTATGTCCAAGGTGACTACCGTTTCAGACACGGATATTGCAGGCATAATCCCAGGAAAATGGTTAAGACATGGGCCGAGAAGGAAATGAGGAATTTGATGAGGTTAAAAGCTGCAGGAATTAGATGCCCGGCTCCTCTCCTCTTGAGATTGCATGTGCTGGTCATGGAGTTCATTGGTACGACTGGTTGGGCCGCGCCTCGTCTTAAGGATGCTGCCTTGTCGATGAACAGGCTACGTGAAAGTTATTTGGAGTTAGTTATTACAATGCGGACCCTCTACCAGAAGTGCAAGTTGGTTCATGGAGATCTTAGTGAATATAACATACTTTATTTTGAGGGTCACCTCTATGTTATAGATGTTTCTCAATCTGTTGATCTTGACCACCCTCATGCCCTCGATTTCCTTCGTGAAGATTGTCTTCATGTTTCTGATTTCTTTAAAAAACATGGTGTAGCTGTAATGACAATACGAGAACTTTTTGATTTTATAGTTGATCCATACCTCACCGATGAGACGATTGATAATTATCTGGAAGAGATGCAAGTGAAAATCTTGGCAAGAGGCGATTTGTCAGTGGAGGATGAAATTGCCGATTCTGTATTTGTGCAGTCATATATTCCAAAGACACTCGATAGTGTCAAACATGCCGAGGAGGATGTAATACGTTTAACAAGTGGTCAGGACACTGGAGATATGTACTATAAGACCATTACAGGGTTAAAACAGCCCCTTCCAAAAGTTCAACCTGTGTCAGAGCTAGAAGATGAGGAAGAACACAATGCAGCAGACCCAATTGAAGAACCCAAAAATTTAACCGGTTTGTCGAATTCTTGCGAGAAAGAGACCGAATCAACATCAGAGGAGGATGAAGGGAGCTCGAATGAGTCGGAAGGTGGACTGGATTCTTCAACCGAAGCGACGCAGACGCCAGCTGAAAAGAAAGCTGCCAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAGAGAGAGTCCCGCAAAACCAAGGTTCCAAAGGCTCAAAAGAGACGAAAGAAGAAGTTGGCCAAGGGCCATAAGTAG 1692 43.2 MEEVGMSAVQEKLVEIEPSTRNNDELVEEEEGEEELSWSSDSEIGDALDWLDAKEAFEAVDGSFSLNARRPNAHGGLYSRHNTSTLQPLSNRNQKFTHHIRASPLAEWEGRFNVGMSNSVTAAIRDSVKEMTIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGKEFAVKIYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVKTWAEKEMRNLMRLKAAGIRCPAPLLLRLHVLVMEFIGTTGWAAPRLKDAALSMNRLRESYLELVITMRTLYQKCKLVHGDLSEYNILYFEGHLYVIDVSQSVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPYLTDETIDNYLEEMQVKILARGDLSVEDEIADSVFVQSYIPKTLDSVKHAEEDVIRLTSGQDTGDMYYKTITGLKQPLPKVQPVSELEDEEEHNAADPIEEPKNLTGLSNSCEKETESTSEEDEGSSNESEGGLDSSTEATQTPAEKKAARKENKKKVKEEKRESRKTKVPKAQKRRKKKLAKGHK 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 67410069 67416316 + Hsped.07g23090.1 Hepe07g2309 575704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2309 563 FunFam Serine/threonine-protein kinase RIO1 168 270 - -
Hepe07g2309 563 MobiDBLite consensus disorder prediction 456 563 - -
Hepe07g2309 563 Gene3D Phosphorylase Kinase; domain 1 168 270 - -
Hepe07g2309 563 MobiDBLite consensus disorder prediction 507 521 - -
Hepe07g2309 563 MobiDBLite consensus disorder prediction 14 40 - -
Hepe07g2309 563 MobiDBLite consensus disorder prediction 26 40 - -
Hepe07g2309 563 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 309 320 IPR018935 GO:0004674(InterPro)|GO:0005524(InterPro)
Hepe07g2309 563 MobiDBLite consensus disorder prediction 522 545 - -
Hepe07g2309 563 PIRSF STPK_RIO1 2 563 IPR017407 GO:0004674(InterPro)
Hepe07g2309 563 CDD RIO1_euk 171 360 - -
Hepe07g2309 563 Pfam RIO1 family 182 369 - -
Hepe07g2309 563 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 14 562 IPR051272 GO:0004674(PANTHER)
Hepe07g2309 563 MobiDBLite consensus disorder prediction 546 563 - -
Hepe07g2309 563 SUPERFAMILY Protein kinase-like (PK-like) 171 357 IPR011009 -
Hepe07g2309 563 Gene3D Transferase(Phosphotransferase) domain 1 276 417 - -
Hepe07g2309 563 SMART rio_2 140 376 IPR000687 GO:0004674(InterPro)|GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2309 K07178 - - csv:101208620 895.96
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g881 . Blo16g00244 . . . . Bma06g00239 . Cmo13g00800 . . . . . . Cpe20g00338 . . . . . . . . . . . . . . . . Cone16ag0055 . . Lsi02g00285 Csa01g00757 Chy12g01210 Cme12g01632 . . Bda11g01629 . . . . . Sed01g1812 . . Cma13g00771 . Car13g00618 . . . Bhi08g01369 Tan05g2119 Cmetu12g0770 Lac10g0339 Hepe07g2309 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34