Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2325 ATGCCTCTTCACCTCGTTCGCCCATTAATTTTCGTTTCAAAATCCACAAAAACACAACATTCAATTGCTCTAAGAATTTCTCACAAATCTTTCATTTCAAAATCAGAGGACTCGCCGGCGAAACTAGAAGATTTCTATGCCAATCTCCTTCATCGGTGTGTTCAAACCTCCGATTCCCGCCATGGATCAGCAATTCATGCCAAGTTCCTCAAAGGAGTTCTTCCATTTTCTCTATTTTTCCATAACCATGTACTTAATCTGTATGTTAAATGTGGAAATCTTTCATGTGGCCTGCAACTGTTCGACGAAATGCCCGAGAGAAATGTTGTGTCCTGGTCCGCAATCATCGCTGGATTCGTCCAACGCGGCCGACCCAACGAAGCCCTCTCTCTATTTAGCCGTATGCATTGCGATGGCACGATAATGCCCAACGAATTCACCCTTGTAAGTGCTCTCCATGCTTGTTCTTTAACTCGGAGACTGATATGTTCATACCAAATTTATGCATTAATTGTTCGTTTAGGATATGGGTCGAATGTTTTCCTTATGAATGCGTTCTTAACTGCTTTAATTAGGCATGAGAAATTGCTTGAAGCTTTAGAAGTTTTTGAGTGTTCTTCATCCAAGGATATTGTATCTTGGAATGCTATGATGGCTGGTTATTTACAATTAGCATATTTTGAACTGCCGAAGTTTTGGCGCCGGATGAATCTCGAGGGAATTAAGCCTGATAATTTTACATTTGCTAGTATCTTAACTGGGTTGGCTGCTGTTTCTGAATTTAGGCTGGGGTTGCAAGTTCATGGACAGCTTGTGAAAAGTGGATATGGGAATGATATTTGTGTAGGGAATTCCTTGTGTGATATGTACATTAAGAATCAGAAGTTGTTTGATGGGTTTAAAGCTTTTGATGAAATGTCTTCAAGTGATGTGTGCTCTTGGACCCAAATGGCAGCAGGGTGCCTCCAGTGTGGGGAACCAATGAAAGCACTCGAGGTCGTTTACGAGATGAAAAACGTCGGCGTGAGGCTAAATAAGTTCACTCTTGCAACTGCCTTGAATGCTTGTGCCAATTTGGCCTCCATGGAAGAAGGGAAGAAATTCCATGGATTGAGAATTAAACTTGGAGCTGATATTGATGTTTGTGTTGATAATGCTCTGCTTGATATGTATGCAAAATGTGGATGTATGACCAGTGCAAATGTCGTCTTTCGTTCAATGGATGAACGATCTGTCGTCTCGTGGACTACTATGATTATGGGATTTGCACACAATGGCCAAACAAAAGAAGCCCTTCAAATTTTTGATGAGATGAGAAAAGGGGAAGCTGAACCTAACCACATCACTTTTATTTGTGTCCTCTATGCTTGTAGCCAAGGAGGCTTCATTGATGAAGCATGGAAATACTTCTCTTCTATGAGTGCTGACCATGGGATTTCACCTTCAGAAGATCACTATGTGTGTATGGTGAATCTCTTAGGCCGAGCTGGATGTATAAAAGAAGCCGAGGATTTGATCCTACGAATGCCATTTCAACCTGGTACATTGGTCTGGCAAACATTGCTCGGCGCTTGCTTAGTACATGGCGATTTAGAGACGGGAAAACGAGCTGCCGAGCATGCATTGAATTTGGATCGAAATGATCCATCGACTTATGTTTTGTTATCGAACATGTTTGCAGGTCGTAGTAACTGGGATGGTGTGGGAAGCTTGAGAGAACTAATGAAAACTAGAGATGTAAAGAAAGTACATGGATCCAGTTGGATGTAA 1770 41.69 MPLHLVRPLIFVSKSTKTQHSIALRISHKSFISKSEDSPAKLEDFYANLLHRCVQTSDSRHGSAIHAKFLKGVLPFSLFFHNHVLNLYVKCGNLSCGLQLFDEMPERNVVSWSAIIAGFVQRGRPNEALSLFSRMHCDGTIMPNEFTLVSALHACSLTRRLICSYQIYALIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFECSSSKDIVSWNAMMAGYLQLAYFELPKFWRRMNLEGIKPDNFTFASILTGLAAVSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYIKNQKLFDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVVYEMKNVGVRLNKFTLATALNACANLASMEEGKKFHGLRIKLGADIDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVVSWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLYACSQGGFIDEAWKYFSSMSADHGISPSEDHYVCMVNLLGRAGCIKEAEDLILRMPFQPGTLVWQTLLGACLVHGDLETGKRAAEHALNLDRNDPSTYVLLSNMFAGRSNWDGVGSLRELMKTRDVKKVHGSSWM 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 67583264 67585119 - Hsped.07g23250.1 Hepe07g2325 575720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2325 589 Gene3D Tetratricopeptide repeat domain 164 258 IPR011990 GO:0005515(InterPro)
Hepe07g2325 589 Gene3D Tetratricopeptide repeat domain 259 369 IPR011990 GO:0005515(InterPro)
Hepe07g2325 589 Gene3D Tetratricopeptide repeat domain 14 163 IPR011990 GO:0005515(InterPro)
Hepe07g2325 589 Pfam PPR repeat 486 509 IPR002885 -
Hepe07g2325 589 Pfam PPR repeat 313 342 IPR002885 -
Hepe07g2325 589 Pfam PPR repeat family 107 155 IPR002885 -
Hepe07g2325 589 Pfam PPR repeat family 411 458 IPR002885 -
Hepe07g2325 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Hepe07g2325 589 Pfam E motif 528 589 IPR046848 -
Hepe07g2325 589 Gene3D Tetratricopeptide repeat domain 385 589 IPR011990 GO:0005515(InterPro)
Hepe07g2325 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Hepe07g2325 589 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 329 589 - -
Hepe07g2325 589 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Hepe07g2325 589 FunFam Pentatricopeptide repeat-containing protein At4g33170 family 381 589 - -
Hepe07g2325 589 NCBIfam pentatricopeptide repeat 81 110 IPR002885 -
Hepe07g2325 589 NCBIfam pentatricopeptide repeat 448 482 IPR002885 -
Hepe07g2325 589 NCBIfam pentatricopeptide repeat 413 446 IPR002885 -
Hepe07g2325 589 NCBIfam pentatricopeptide repeat 110 140 IPR002885 -
Hepe07g2325 589 FunFam Pentatricopeptide repeat-containing protein 266 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2325 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2325 Hepe-Chr7:67583264 Hepe06g1632 Hepe-Chr6:67192517 7.70e-117 dispersed
Hepe07g2325 Hepe-Chr7:67583264 Hepe04g1145 Hepe-Chr4:66571962 2.50e-116 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29