Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2331 ATGCTAGCTGATCTCTCTTCTCCTTCACTTACTTGTTTTGATCCTTTGTCTAATTGCTTTGAAAACAATGGAATCAATAACAAAAGAAAAAGAAGACCTGCTGGAACTCCAGACCCGGATGCAGAGGTGGTTTCTCTATCTCCGAAAACCCTATTGGAATCAGATCGTTACGTATGTGAGATCTGCAACCAAGGGTTTCAGAGAGATCAGAATCTACAGATGCATCGACGACGGCATAAGGTGCCGTGGAAGTTGTTGAAGAGAACCGAGGCGGCGGCCGTCGTGAGAAAACGAGTGTTCGTTTGCCCCGAACCGAGCTGCTTACACCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATAAAGAAGCACTTTAGAAGAAAGCATAGTAATCATAAGCAATGGGTTTGTGAAAAATGCTCTAAAGGATATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGAACTAGAGGTCATTCCTGTGACTGTGGTCGAGTTTTCTCCAGGGTGGAGAGTTTCATAGAACATCAAGATACTTGCAAATTGGGTCATCAACATCAACAACAACCAGAAAAAAATCCATCTTTACAACCACCACCACCACCACCATGTTTATCTAGAACAGCTTCAAGTCCAACTCCAAGCCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAAACCACAAAATTACTACAACAACAAAAATCCCACAAAGAATCATTAGCCATCATCATCAAAATTTGGACCTTCAACTTTTTTCCACTACTTCAACTTCCATTCATGTTTCAGTTAATAATTCTCCAAAAAGACATGAAAATTACTCAACCCATTTGCAGCTTTCAATTGGTTCTTGCAATTATGGTGAGAAAAATGATGATGATCATAATAATGATCATGAACTTAATCATCAAAGTGATGAGAAAATTGGAAGTGGGTTTGGTTTGTTGAGGCTGAAAGAGGAAGCTAAAGAGCAAATGAGAGTGGCAATGGAAGAGAAGGCAATGGCTGAAGAAGCAAGAAATGAAGCAAAGAAGCAGATTGAATTGGCTGAGAAGGAGTTGGCCAATGCTAAGAAAATGAGACAACAAGCTCAAGCTGAGTTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATCAAGAAAATCAACTCCACCATCCTTCAAATCACTTGCCAAGTTTGTAGGCAACATTTTCATCAATTGCCAAAAATTTGA 1230 40.0 MLADLSSPSLTCFDPLSNCFENNGINNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRTEAAAVVRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCKLGHQHQQQPEKNPSLQPPPPPPCLSRTASSPTPSPSSDTNFSFLNQNHKITTTTKIPQRIISHHHQNLDLQLFSTTSTSIHVSVNNSPKRHENYSTHLQLSIGSCNYGEKNDDDHNNDHELNHQSDEKIGSGFGLLRLKEEAKEQMRVAMEEKAMAEEARNEAKKQIELAEKELANAKKMRQQAQAELQRALALKEHAIKKINSTILQITCQVCRQHFHQLPKI 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 67662460 67664813 + Hsped.07g23310.1 Hepe07g2331 575726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2331 409 SMART c2h2final6 100 130 IPR013087 -
Hepe07g2331 409 SMART c2h2final6 136 163 IPR013087 -
Hepe07g2331 409 SMART c2h2final6 57 79 IPR013087 -
Hepe07g2331 409 Coils Coil 324 386 - -
Hepe07g2331 409 FunFam protein indeterminate-domain 12-like 36 106 - -
Hepe07g2331 409 MobiDBLite consensus disorder prediction 197 213 - -
Hepe07g2331 409 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 96 130 - -
Hepe07g2331 409 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 372 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe07g2331 409 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Hepe07g2331 409 MobiDBLite consensus disorder prediction 185 228 - -
Hepe07g2331 409 Gene3D Classic Zinc Finger 44 132 - -
Hepe07g2331 409 MobiDBLite consensus disorder prediction 214 228 - -
Hepe07g2331 409 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Hepe07g2331 409 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 185 - -
Hepe07g2331 409 SUPERFAMILY beta-beta-alpha zinc fingers 56 156 IPR036236 -
Hepe07g2331 409 MobiDBLite consensus disorder prediction 24 43 - -
Hepe07g2331 409 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 135 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2331 Hepe-Chr7:67662460 Hepe07g2566 Hepe-Chr7:70116971 2.83e-124 dispersed
Hepe07g2331 Hepe-Chr7:67662460 Hepe01g1698 Hepe-Chr1:82072650 3.09e-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56038 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2331 K25871 - csv:101210748 667.922