Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2336 ATGGCTCTGGTTCGTGATCGCCGCCAGTTAAACCTCCGCCTCCCCGACCTCTCCGACTGCCGTCCCCGCTTCCCTCTCCCCCTCCCTCCATCCTCCTCCGCCGCAGCACCTCCCTCCGCCTCCGCCTCTGCCGCCGCTCCCCCCGCCATCTCCTCCTCCGACCTCGACAAACTCCAAGTCCTCGGCCACGGCAACGGCGGCACCGTCTACAAAGTCCACCACAAGCGCACCTCCGCCACCTACGCTCTCAAGGTCGTCCACGGCGACTGCGATCCCACCGTTCGCCGTCAGGTCTTCAGAGAGATGGAGATCCTCCGCCGTACGGACTCTCCCTACGTCGTCCAGTGCCATGGAATCTTCGAGAAGCCGTCTGGAGATGTCACGATTTTGATGGAGTATATGGATCTAGGATCGCTCGATTCACTCTTGAAGAAGAACTCCACGTTGCCGGAAGCGACTCTCGCTCACGTCTCGCGTCAGGTTCTTAACGGCCTTCACTATCTTCACTCTCACAAAATCATTCATCGCGATATTAAACCGTCGAATCTGTTGGTGAATAAGAATATGGAGGTTAAAATCGCCGATTTCGGAGTGAGTAAAATCATGTGCAGGACTCTGGATGCTTGCAATTCCTACGTCGGAACCTGCGCTTATATGAGTCCAGAGCGGTTCGATCCGGAGACTTACGGCGGAAATTACAACGGTTACGCCGGCGACATATGGAGTTTGGGGCTAACTCTTCTCGAGCTCTATTTAGGCCATTTTCCTTTTCTTCCGGCTGGTCAGAGACCGGATTGGGCGACTCTGATGTGTGCGATTTGCTTCGGCGAACCGCCGACGCTGCCGGAGGATGCGTCGGAGGAGTTTCGTAGCTTCGTCGAGTGTTGTTTGCAGAAGGAATCGAGTAAGAGGTCGACGGCGGCGCAATTGTTGACGCATCCATTTGTGTGCAAGGAATCGAGATCCGATCGGTGA 975 56.1 MALVRDRRQLNLRLPDLSDCRPRFPLPLPPSSSAAAPPSASASAAAPPAISSSDLDKLQVLGHGNGGTVYKVHHKRTSATYALKVVHGDCDPTVRRQVFREMEILRRTDSPYVVQCHGIFEKPSGDVTILMEYMDLGSLDSLLKKNSTLPEATLAHVSRQVLNGLHYLHSHKIIHRDIKPSNLLVNKNMEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPETYGGNYNGYAGDIWSLGLTLLELYLGHFPFLPAGQRPDWATLMCAICFGEPPTLPEDASEEFRSFVECCLQKESSKRSTAAQLLTHPFVCKESRSDR 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 67729766 67731164 + Hsped.07g23360.1 Hepe07g2336 575731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2336 324 FunFam Mitogen-activated protein kinase kinase 29 131 - -
Hepe07g2336 324 SUPERFAMILY Protein kinase-like (PK-like) 54 318 IPR011009 -
Hepe07g2336 324 Gene3D Phosphorylase Kinase; domain 1 38 135 - -
Hepe07g2336 324 CDD PKc_MAPKK_plant_like 54 316 - -
Hepe07g2336 324 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524(InterPro)
Hepe07g2336 324 ProSiteProfiles Protein kinase domain profile. 55 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g2336 324 Gene3D Transferase(Phosphotransferase) domain 1 137 324 - -
Hepe07g2336 324 SMART serkin_6 55 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g2336 324 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 49 319 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Hepe07g2336 324 Pfam Protein kinase domain 57 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe07g2336 324 FunFam Mitogen-activated protein kinase 2 136 324 - -
Hepe07g2336 324 MobiDBLite consensus disorder prediction 17 48 - -
Hepe07g2336 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2336 K20604 - - csv:101203133 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1587 Hepe-Chr2:21058760 Hepe07g2336 Hepe-Chr7:67729766 8.68e-100 dispersed
Hepe07g2336 Hepe-Chr7:67729766 Hepe08g2630 Hepe-Chr8:68262406 1.27e-66 dispersed
Hepe07g2336 Hepe-Chr7:67729766 Hepe08g2677 Hepe-Chr8:68806504 7.35e-74 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0895 . 30 355 MAP Kinase Kinase Gene Family AT4G26070 69.9 3.3e-135 478.4
Hepe08g2677 . 48 372 MAP Kinase Kinase Gene Family AT4G26070 66.3 4.0e-125 444.9
Hepe08g2630 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.9 2.0e-108 389.4
Hepe09g0895 . 1 328 MAP Kinase Kinase Gene Family AT4G29810 67.4 3.7e-131 464.9
Hepe08g2677 . 22 346 MAP Kinase Kinase Gene Family AT4G29810 61.6 1.8e-114 409.5
Hepe08g2630 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 60.0 1.6e-110 396.4
Hepe02g1784 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.3 1.4e-227 785.8
Hepe02g1587 . 1 375 MAP Kinase Kinase Gene Family AT1G51660 66.3 2.4e-128 455.7
Hepe07g2336 . 5 322 MAP Kinase Kinase Gene Family AT1G51660 52.0 2.8e-84 309.3
Hepe02g1587 . 1 375 MAP Kinase Kinase Gene Family AT3G21220 67.0 1.9e-130 462.6
Hepe07g2336 . 49 318 MAP Kinase Kinase Gene Family AT3G21220 54.8 6.6e-83 304.7
Hepe08g2630 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 3.8e-171 597.8
Hepe09g0895 . 14 354 MAP Kinase Kinase Gene Family AT5G56580 59.6 4.9e-118 421.4
Hepe08g2677 . 32 361 MAP Kinase Kinase Gene Family AT5G56580 56.3 1.5e-106 383.3
Hepe07g2336 . 1 316 MAP Kinase Kinase Gene Family AT1G18350 63.1 4.4e-107 384.8
Hepe07g2336 . 1 304 MAP Kinase Kinase Gene Family AT3G06230 51.0 3.7e-79 292.0
Hepe07g2336 . 1 316 MAP Kinase Kinase Gene Family AT1G73500 64.5 3.9e-111 398.3
Hepe02g1587 . 84 343 MAP Kinase Kinase Gene Family AT1G73500 52.5 2.2e-77 286.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011011 1 1 0 0 0 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72992 PF00069 Pkinase 5.40E-65 CL0016 Hepe PK