Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2351 ATGCAACTGCAAGCTCGTAGACTTCAGTTAATCTTCCTAATTCTATGTCTCTGCTCTCTCTTCATCAACGCTCGTCCATTCCTCATCGTCATCTCTCAAGATGACCTCAAGGATGCTGCGCCTCCCGACGACTCCTCCTCCGATTCCTCCAACTCCGACTCCGCCGAGTGGGACGAGTTCGGAGAACCCGAATCTCCAAACTCCTCCCTGGAGCTCGACCCGGGTACTTGGCGTCCGATTTTCGAACCGGATTCCCCGACCTCCGGCTCCGACGCGCCGGAGGATCTGTACTACACTGCTTTGGGGAAAATGATGGCGGCGGTTAGCTCCGGGGAGTTGAGGTTGATGGAGGATGCGGTTGGGGATATTGATCAAATTGCTGCGGAGAGTGGGGATCCGCACGCGCAATCAGTGCTAGGGTTATTGTATGGAATGGGGATAATGAAGGAGACGAATAAAGCTAAGGCGTTTATGTATCACTATTTTGCCGCTGATGGGAACAAGCAATCTAAGATGGCTCTTGCGTATATTTACTTCAGGCAAGAAATGTATGACAAAGCAGTCAAGCTTTATGCTGAATTAGCAGAGGTAGCTATTAATAGTTTATTAGTTTCCAAGGATTCTCCAGTAATTGAACCTGTGAGGATCCATAATGGAGCTGAGGAGAACAAGCAGGCCTTGAGAAAGTCTCGAGGAGAGGAGGACGAGGACTTCCAAATTTTGGAATATCAGGCGCAGAAGGGTAATGCTGGAGCTATGTATAGAATTGGGTTATTTTACTACTTTGGATTGAGAGGGTTGAGGCGTGATCATGCTAAAGCATTGTCCTGGTTTTCCAAGGCTGTGGAGAAAGGTGAACCAAGGTCTATGGAACTACTCGGAGAGATTTATGCAAGGGGTGCCGGAGTTGAGAGGGATTATACTAAGGCACTTCAATGGCTAACTCGTGCATCTAAGCAGCCATCATTTTCTGCTTACAATGGCATGGGATATTTATACGTCAAAGGTTATGGAGTGGAAAAAAACTTTACCAAGGCCAAGGAGTACTTTGAGAAAGCTGCCAACAACGACGAGTCTGGTGGTCACTATAATCTAGGAGTTATGTATCTAAAAGGAATTGGAGTAAAGAGAGACGTGAAGAAGGCATGTACTCATTTTATAGTGGCTGCTAATGCTGGACAACCAAAGGCATTCTACCAGCTGGCAAAGATGTTTCATACTGGTATTGGGCTCAAGAGGAATATTGCTATGGCTAGTGCATTATACAAATTAGTTGCTGAACGAGGGCCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCATATCTGAAAGCTGACATTGGCAAGGCATTTTTCTTGTATGCAAGAATGGCTGAGCTAGGATATGAGGTAGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTTTTGGAGAATCTGGCTTTTGCACAGATGCAGAAAGACATCAGAGAGCTCATTCTCTTTGGTGGCAAGCATCCGAGCAGGGCAACGAACATGCTGCTTTACTGATTGGGGATGCATATTATTATGGTCGGGGAACTGATGTAGATTTTGATCGTGCTGCGGAAGCATACATGCATGCCAAATCCCAACTAAATGCACAAGCCATGTTTAACCTTGGTTACATGCATGAACATGGTCTTGGCCTTCCGTTTGACCTTCATCTAGCCAAGCGTTACTATGATCAAGCTCTTGAACTTGATCCAGCTGCCAGATTGCCTGTCAAGCTGGCTCTAGTAAGCTTGTGGTTACGAAAGAATCATGCCGACAATTTTATGGTCCATGTGATTGATTCGTTGCCAGAAGTGTATCCAAAAATTGATGCATGGGTGGAAGATGTACTATTGGAGGAAGGAAACGCAACAATTCTAACTCTATTTGCCTGCCTCCTCACTGTCCTTTACCTTAGAGAGCGCCAAAGGAGGCATGCAGCTGTTCGTATTGCTGCTGCTGCTGAGGCTGTGCCACTTCACCCCAATGACCACGTTGCTGCTGCCCAAATAAATCAAAATTAA 2055 45.99 MQLQARRLQLIFLILCLCSLFINARPFLIVISQDDLKDAAPPDDSSSDSSNSDSAEWDEFGEPESPNSSLELDPGTWRPIFEPDSPTSGSDAPEDLYYTALGKMMAAVSSGELRLMEDAVGDIDQIAAESGDPHAQSVLGLLYGMGIMKETNKAKAFMYHYFAADGNKQSKMALAYIYFRQEMYDKAVKLYAELAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPRSMELLGEIYARGAGVERDYTKALQWLTRASKQPSFSAYNGMGYLYVKGYGVEKNFTKAKEYFEKAANNDESGGHYNLGVMYLKGIGVKRDVKKACTHFIVAANAGQPKAFYQLAKMFHTGIGLKRNIAMASALYKLVAERGPWSSLSRWALESYLKADIGKAFFLYARMAELGYEVAQSNAAWILDKYGEQSMCFGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDFDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALVSLWLRKNHADNFMVHVIDSLPEVYPKIDAWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAAVRIAAAAEAVPLHPNDHVAAAQINQN 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 67863096 67868036 + Hsped.07g23510.1 Hepe07g2351 575746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2351 684 FunFam ERAD-associated E3 ubiquitin-protein ligase component HRD3A 215 326 - -
Hepe07g2351 684 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 3 660 IPR044623 GO:0036503(InterPro)
Hepe07g2351 684 SMART sel1 547 582 IPR006597 -
Hepe07g2351 684 SMART sel1 395 430 IPR006597 -
Hepe07g2351 684 SMART sel1 133 168 IPR006597 -
Hepe07g2351 684 SMART sel1 250 286 IPR006597 -
Hepe07g2351 684 SMART sel1 511 546 IPR006597 -
Hepe07g2351 684 SMART sel1 323 358 IPR006597 -
Hepe07g2351 684 SMART sel1 359 394 IPR006597 -
Hepe07g2351 684 SMART sel1 287 322 IPR006597 -
Hepe07g2351 684 MobiDBLite consensus disorder prediction 38 92 - -
Hepe07g2351 684 Gene3D Tetratricopeptide repeat domain 123 207 IPR011990 GO:0005515(InterPro)
Hepe07g2351 684 Gene3D Tetratricopeptide repeat domain 225 603 IPR011990 GO:0005515(InterPro)
Hepe07g2351 684 SUPERFAMILY HCP-like 125 196 - -
Hepe07g2351 684 Pfam Sel1 repeat 324 356 IPR006597 -
Hepe07g2351 684 Pfam Sel1 repeat 252 285 IPR006597 -
Hepe07g2351 684 Pfam Sel1 repeat 362 393 IPR006597 -
Hepe07g2351 684 Pfam Sel1 repeat 513 535 IPR006597 -
Hepe07g2351 684 Pfam Sel1 repeat 443 462 IPR006597 -
Hepe07g2351 684 Pfam Sel1 repeat 547 580 IPR006597 -
Hepe07g2351 684 Pfam Sel1 repeat 399 429 IPR006597 -
Hepe07g2351 684 Pfam Sel1 repeat 288 320 IPR006597 -
Hepe07g2351 684 Pfam Sel1 repeat 133 167 IPR006597 -
Hepe07g2351 684 SUPERFAMILY HCP-like 442 583 - -
Hepe07g2351 684 SUPERFAMILY HCP-like 231 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2351 K14026 - - csv:101221047 1226.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38