Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2392 ATGGCTGAGTTCACTGCAAACTTTCAGAGCTTAAAGTCATCATCTTTTCCTCTAATGGAAATGGATTCCAACCAAAATCCAAGTCTACTTCATAACCCAAATGGGATTTTTCTTGAAAACATTCCTGTTTTGTTCAATGACAGCAATTTCTTTGGCAATCAAGCTGCTCCTCCTCCAAGAATCTTGGAAAATTGGGGAGAAAATTTCACAGGAATTTTCTCTCTAGCCAATCAGATCATTACTGCACCTGTTTTTGATGAGCCTACAAATCCATCTGGAAATGACCTCCATGGAAGCAAAAAAAGAAAGCTTGAAATTGATGCTTCTGAAAGCAGCTCTGGCAACTCAACTCCTCAGATTTCTGAAACTGGGATCAACCCTAAAAATAACTCTGGAAAAGGAAAGCGGTCGAAAAAAGGCGAAAACGACGGCGAGAAACCGAGGGAAGTGGTTCATGTTAGAGCCAGAAGAGGTCAAGCAACAGATAGCCATAGTGTAGCAGAAAGGATAAGAAGAGAAAAAATCAATGAAAGATTGAGATGCTTGCAAGACATTGTTCCTGGATGCTATAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGTTCCTATTATGACTTCAATTCAGACTCTTTAGATGCTGCTGACAAATTAAAGGCAAAGGAAATGAGGGAGGGAAATGGAGGATCAACTCAACTTGGTCCTTTTGATTTGTACTCAACATTGTCATTCAACAACATATGA 810 39.38 MAEFTANFQSLKSSSFPLMEMDSNQNPSLLHNPNGIFLENIPVLFNDSNFFGNQAAPPPRILENWGENFTGIFSLANQIITAPVFDEPTNPSGNDLHGSKKRKLEIDASESSSGNSTPQISETGINPKNNSGKGKRSKKGENDGEKPREVVHVRARRGQATDSHSVAERIRREKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDSLDAADKLKAKEMREGNGGSTQLGPFDLYSTLSFNNI 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68266336 68267737 + Hsped.07g23920.1 Hepe07g2392 575787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2392 269 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983(InterPro)
Hepe07g2392 269 MobiDBLite consensus disorder prediction 109 131 - -
Hepe07g2392 269 MobiDBLite consensus disorder prediction 134 166 - -
Hepe07g2392 269 MobiDBLite consensus disorder prediction 86 166 - -
Hepe07g2392 269 Gene3D - 156 227 IPR036638 GO:0046983(InterPro)
Hepe07g2392 269 FunFam transcription factor BEE 3-like 156 227 - -
Hepe07g2392 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 227 IPR036638 GO:0046983(InterPro)
Hepe07g2392 269 CDD bHLH_AtBPE_like 149 234 - -
Hepe07g2392 269 SMART finulus 165 215 IPR011598 GO:0046983(InterPro)
Hepe07g2392 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 209 IPR011598 GO:0046983(InterPro)
Hepe07g2392 269 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 102 236 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2392 Hepe-Chr7:68266336 Hepe10g1832 Hepe-Chr10:55051312 5.29e-33 dispersed
Hepe02g2699 Hepe-Chr2:74908893 Hepe07g2392 Hepe-Chr7:68266336 1.75e-44 wgd
Hepe07g2392 Hepe-Chr7:68266336 Hepe09g0348 Hepe-Chr9:3058840 3.67e-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56044 PF00010 HLH 1.50E-05 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2392 - - - 0.0