Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2435 ATGTCCGGCCACTCATCAACGACGACGATGGCGGGTGACTCACTCAACTCCTCCGCCTCCCCAGAAGATCGCCTAAGAGCCCTAATTTCCTGTCCTTCCGCGAGTACCAAATCCCTACTCGAACACGAATCTGTAGAAGGTGAACTTCAAGAAAATCAGCCGCTGATAGACGATAATCCTTCTTCTATTTGTGTAATTTGCTTTTCCGATGATGGAAAAGCGGAGAGAGGCAAGCTTGACTCCTGTGACCACTATTTTTGCTTCGTCTGCATCATGGAGTGGGCGAGGATTGAATCTAGATGCCCTGCTTGCAAGGGCAGGTTCACTGTTGTTCATAGAGTTGCGAAGGAAGGCTGTTGTCTCCGTCAACGAATTGTTAATATTCCATTGCGGAATCAGGATCACTCTGCTAATGGAAATACTACAATTAGGGATCCATATTCTGAAACAACTTGCACTGTGTGCAAGGGTATGGAAGATGAAGGTCTCATGTTACTCTGTGATCTCTGTGATTCAGCTGCTCATACTTATTGTGTTGGCCTAGGTTCTAATGTACCAGAAGGTGATTGGTTTTGCCATGATTGCACCATCTCCAGGGCTCAACATGCCGATACTGAATTGGATACTAGTCGCAACGATCAAAATCAAACAGCAACAGTTGAAGCACCCATTTCCATTTCCGATATAGTTGAAGAAGCACCCATTTTCATTTCCGATATAGTTGAAGAAGCACCCATTTCCATTTCCGATATAGTAAAAGAATCAAGTGCTCAATCAGTTGGCATACCTCGCAGAAGGGCCGTTTTACATTCAAATCGTGAGCCACCTTCCATTGTCCCCAGTCGGAGAAGTAGCGTGGCCGATAAATCATTGCCTAGTCGTGGTGGTAACGCTTCTGGAACAAGTGCGAGAACATTACACCGTTGTCGCAACATCCATGGTCATATAAGGGCATTCCGTGAAAATTGGAGTGCTTTACAAAGGGGGTCGCTGAATTTTCCCGCTAATAGCTCATCGACATATGGTGGCAACAGTTCCAAACGAGAAATTGGTACTGCAGTAAACAACCAAACAGGTCAACCCCATTCTTCGACAGCCATAAGCTTGCAGTTGCAGGCAACCTCCGGACCTGAGTGTAACGAAAGGTCTTATGATGTTGAGAAGGCATGGAAGATGATGGAAATTGCAAAGGCAAAGGCTATACGTGAGGGAGATCAAACCTTGAAATCTTCTGCTAGCAGACAAATTAGCACAAAAGTAAAAGATTGCCATACAGCAAAAGGTCAACAGTATAAAATCAAGAAGCCAAACGAGCCAGCAAAGGATAAGAAGGAAATGGGAAAGCACAGATCGCCAGAGTTGGATAAGCAACTGTGTCGTCCTGTAGCAAGTAAGAAGAATAAAGCTTCTATTGAGTTTTTTCCTACCAATTCATCTAGTTATGGAGAATCTTCCTTGGGTAATATGGTCCAGACTTGCAGAGCTGATTTCACCCATGAAAATGGGAGAAATCCATCAAACAAAATCGTGGATGAAGTTTCATCATCCTCCACAAGGACACAGGCCTCGGAAAAGGGCCATGCTGCTCGTGATGCTCACAATGCCAAAAGTGAGATACAAACACTCGTCAAGATCAATCTAAAACTCCTAACCCGAGACAAAAAATTGGGATATGAAAGATACAAGGAAGTGGCAAGGCTCGCAACACACACCATCATGGCAGCATGTGGTTTAGAGCCCCCTCCAAAATCGAGCAAGCGATTCTTATCGTGCTCGGTTTGCAGCCATACAGAAGAAGCCCGACAGCTTCACAGGTCCACTCTGATGCCAGATTCTTGCAGGGAATGCTTCCTGATGTATGTGAAGGATGTAGTTAACGCACTCATGTTAGAAAAATTGGAGGTGGGTTCCTCTTGTTAA 1920 44.9 MSGHSSTTTMAGDSLNSSASPEDRLRALISCPSASTKSLLEHESVEGELQENQPLIDDNPSSICVICFSDDGKAERGKLDSCDHYFCFVCIMEWARIESRCPACKGRFTVVHRVAKEGCCLRQRIVNIPLRNQDHSANGNTTIRDPYSETTCTVCKGMEDEGLMLLCDLCDSAAHTYCVGLGSNVPEGDWFCHDCTISRAQHADTELDTSRNDQNQTATVEAPISISDIVEEAPIFISDIVEEAPISISDIVKESSAQSVGIPRRRAVLHSNREPPSIVPSRRSSVADKSLPSRGGNASGTSARTLHRCRNIHGHIRAFRENWSALQRGSLNFPANSSSTYGGNSSKREIGTAVNNQTGQPHSSTAISLQLQATSGPECNERSYDVEKAWKMMEIAKAKAIREGDQTLKSSASRQISTKVKDCHTAKGQQYKIKKPNEPAKDKKEMGKHRSPELDKQLCRPVASKKNKASIEFFPTNSSSYGESSLGNMVQTCRADFTHENGRNPSNKIVDEVSSSSTRTQASEKGHAARDAHNAKSEIQTLVKINLKLLTRDKKLGYERYKEVARLATHTIMAACGLEPPPKSSKRFLSCSVCSHTEEARQLHRSTLMPDSCRECFLMYVKDVVNALMLEKLEVGSSC 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68724108 68727731 + Hsped.07g24350.1 Hepe07g2435 575830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2435 639 MobiDBLite consensus disorder prediction 1 21 - -
Hepe07g2435 639 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
Hepe07g2435 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 115 IPR013083 -
Hepe07g2435 639 MobiDBLite consensus disorder prediction 434 454 - -
Hepe07g2435 639 Pfam Ring finger domain 64 105 IPR001841 -
Hepe07g2435 639 SUPERFAMILY RING/U-box 63 112 - -
Hepe07g2435 639 SMART PHD_3 151 196 IPR001965 -
Hepe07g2435 639 MobiDBLite consensus disorder prediction 498 523 - -
Hepe07g2435 639 MobiDBLite consensus disorder prediction 277 305 - -
Hepe07g2435 639 PANTHER F18C1.6 PROTEIN 52 632 - -
Hepe07g2435 639 SUPERFAMILY FYVE/PHD zinc finger 143 198 IPR011011 -
Hepe07g2435 639 Pfam PHD-finger 152 195 IPR019787 -
Hepe07g2435 639 SMART ring_2 64 104 IPR001841 -
Hepe07g2435 639 SMART ring_2 152 195 IPR001841 -
Hepe07g2435 639 MobiDBLite consensus disorder prediction 498 535 - -
Hepe07g2435 639 MobiDBLite consensus disorder prediction 337 365 - -
Hepe07g2435 639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 224 IPR013083 -
Hepe07g2435 639 ProSiteProfiles Zinc finger PHD-type profile. 149 198 IPR019787 -
Hepe07g2435 639 ProSiteProfiles Zinc finger RING-type profile. 64 105 IPR001841 -
Hepe07g2435 639 MobiDBLite consensus disorder prediction 262 305 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2435 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1459 Hepe-Chr6:65160449 Hepe07g2435 Hepe-Chr7:68724108 9.31e-14 dispersed
Hepe07g2435 Hepe-Chr7:68724108 Hepe09g1693 Hepe-Chr9:51152869 3.53e-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g415 . Blo16g00156 . . . Bpe13g00328 Bma06g00016 . Cmo13g01096 . . . . . . Cpe20g00095 . . . . . . . . . . . . . . . Cone2ag0788 . . . Lsi02g00146 Csa01g00629 Chy12g01471 Cme12g01913 . . . . . . . . Sed08g2145 . . Cma13g01053 . Car13g00887 . . . Bhi08g01047 Tan05g2316 Cmetu12g1391 Lac10g0192 Hepe07g2435 . . Cla04g01131 Cam04g1183 Cec01g1696 Cco01g1742 Clacu04g1211 Cmu04g1190 Cre01g1488 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008899 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56048 PF00628 PHD 2.20E-10 CL0390 Hepe TR