Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2444 ATGGGGAGGGGAAGAGTGCAATTGAAGAGGATTGAGAATAAGATTAATAGGCAAGTGACTTTCTCAAAGAGAAGATCTGGTTTGCTGAAGAAAGCTCATGAAATCTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACCAAAGGGAAACTCTTTGAATACTCCACTGATGCTTGCATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGACAACCAATCAAGTGGAAATTGGACTCTTGAACATGCAAAGCTTAAAGCCAGAATAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGAGTCGTTGAGTTTAAAAGAGCTTCAAAATATTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGACCTTCAGAAAAAGGACAAGGCGCTACAGGAGCAAAATAACCTGTTAGCCAAGAAGATAAAGGAGAAGGAGAAAGCACAAGCTCAAAATCCACAATTGGAGCAGCAGCAGCAGAATAGCCATGGCATGGAATCTTCCCCACTTCTCCTACCTCAACCATTCCAATCTCTTAACATGAGTTGTCCATACCCGTCCCACGGGGCCGGAGACGAAGACGCTGTCGCGAATCACGACAGATCCGGCGCCCTCCTGCCACCGTGGATGCTCCGCCACCACCTTGGTGACTAA 744 44.62 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDACMEKILERYERYSYAERRLVANDNQSSGNWTLEHAKLKARIEVLQKNHRHFMGEDLESLSLKELQNIEQQLDSALKHIRARKNQLMHESISDLQKKDKALQEQNNLLAKKIKEKEKAQAQNPQLEQQQQNSHGMESSPLLLPQPFQSLNMSCPYPSHGAGDEDAVANHDRSGALLPPWMLRHHLGD 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68775594 68783373 - Hsped.07g24440.1 Hepe07g2444 575839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2444 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2444 247 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2444 247 Pfam K-box region 84 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g2444 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g2444 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2444 247 MobiDBLite consensus disorder prediction 181 214 - -
Hepe07g2444 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2444 247 MobiDBLite consensus disorder prediction 174 222 - -
Hepe07g2444 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Hepe07g2444 247 Coils Coil 122 145 - -
Hepe07g2444 247 Coils Coil 151 188 - -
Hepe07g2444 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2444 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2444 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2444 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g2444 247 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2444 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe07g2444 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe04g2099 Hepe-Chr4:75823042 Hepe07g2444 Hepe-Chr7:68775594 4.23e-32 dispersed
Hepe07g0206 Hepe-Chr7:1840810 Hepe07g2444 Hepe-Chr7:68775594 4.72e-50 dispersed
Hepe07g2444 Hepe-Chr7:68775594 Hepe10g0567 Hepe-Chr10:6769448 2.70e-49 dispersed
Hepe07g2444 Hepe-Chr7:68775594 Hepe07g2445 Hepe-Chr7:68790461 5.45e-52 tandem
Hepe10g0566 Hepe-Chr10:6750873 Hepe07g2444 Hepe-Chr7:68775594 2.49e-91 wgd
Hepe02g0915 Hepe-Chr2:11016076 Hepe07g2444 Hepe-Chr7:68775594 2.51e-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56051 PF01486 K-box 8.20E-30 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2444 K09264 - csv:101207225 394.815