Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2445 ATGGGAAGAGGCAGAGTTGAATTGAAGAGGATTGAGAACAAAATAAACAGGCAGGTCACTTTTGCCAAGAGGAGAAATGGCTTGCTTAAGAAAGCTTATGAACTCTCAGTTCTCTGTGATGCTGAACTTGCTCTCATCATCTTTTCTAATCGTGGCAAGCTCTTTGAGTTTTCTAGCTCCTCTAGCATGACCAAAACGCTCGAGAGGTATCGAAGGTGTAGTTATGGTATACTGGATGCTACCCGCCAAGTAAATGAGAATCAGCAGCCACAAAACTTTGATGATTATTTGAACCTAAAAGCCACTGTTGAATTCATGCAGCAATCTCAGAGAAACCTTTTGGGGGAAGATTTAGGGCCATTGAATACCAAGGAACTTGAGCAACTTGAACATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAACTCTACTTGAGCAGCTTACAGAACTTCAACACAAGGAATATATGCTCGTTGAAGACAATCGAGGTTTAAGAAAGAAGCTGGAAGAAAGCAGCGCACAAGTGGCGGCGGCGGCCGCCGCCACATGGGGCTGGGAAGGCGGCGCCAGAGGCCACAGCATGGAGTATCCCAGCCGAGTAGCTTCACAAACAGATGCATTTTTCCACCCCATAATTCAACCCACTCCCACTTTACAAATTGGGTACAATTCTGTTGGGTCATTGGGGTTGAATAATAATGTTGGACCTTCATCCCAAAATGCCAATGGATTTCATCTTGGTTGGATGCTTTAA 768 44.66 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSNRGKLFEFSSSSSMTKTLERYRRCSYGILDATRQVNENQQPQNFDDYLNLKATVEFMQQSQRNLLGEDLGPLNTKELEQLEHQLETSLERIRSTKTQTLLEQLTELQHKEYMLVEDNRGLRKKLEESSAQVAAAAAATWGWEGGARGHSMEYPSRVASQTDAFFHPIIQPTPTLQIGYNSVGSLGLNNNVGPSSQNANGFHLGWML 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68790461 68795591 - Hsped.07g24450.1 Hepe07g2445 575840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2445 255 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe07g2445 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2445 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2445 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2445 255 Coils Coil 126 146 - -
Hepe07g2445 255 Gene3D - 13 99 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2445 255 FunFam MADS-box transcription factor 1 13 87 - -
Hepe07g2445 255 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g2445 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2445 255 Pfam K-box region 85 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe07g2445 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g2445 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2445 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2445 255 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2445 255 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1115 Hepe-Chr3:64068623 Hepe07g2445 Hepe-Chr7:68790461 9.26e-79 dispersed
Hepe06g1597 Hepe-Chr6:66778398 Hepe07g2445 Hepe-Chr7:68790461 4.43e-38 dispersed
Hepe07g2118 Hepe-Chr7:65492043 Hepe07g2445 Hepe-Chr7:68790461 3.68e-39 dispersed
Hepe07g2445 Hepe-Chr7:68790461 Hepe10g0567 Hepe-Chr10:6769448 1.65e-64 dispersed
Hepe07g2444 Hepe-Chr7:68775594 Hepe07g2445 Hepe-Chr7:68790461 5.45e-52 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56052 PF01486 K-box 1.80E-24 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2445 K09264 - csv:101204197 405.216