Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2446 ATGGAGTCTTGGAACTATGGTTCTCAAGGGAAGGGATTTTTGTCTGATGAGATGAATTCTTCTACTAATTCTCCTCTGAGAAGTAAATACTCTTTATTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTTCGGGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTGCCTGATGATTCTGTCAGTGATGTCCTGAATACCAAAATTGATGGTGGGAGAAACTTGAATCTTGTTTTGCCTTCCTCTCATCCACTTCATGGAGAAGAGGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCGTCTCTTATTGATTTGAAGTTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAGTCATCAACTTCTCAGAAGAAAATGAGATCTCAAGGGGTGAATTTCCAGATTGCGTTTTGTCAAGTTTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGACTATCACAAGAGGCATAAAGTTTGTGAAGTTCATTCAAAGACTGCCAAAGTTATTGTTAATGGCATAGAACAGAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTTGCTGAATTTGATGATGGTAAACGCAGCTGTCGAAAACGGCTTGCAGGCCACAATGAACGCAGAAGAAAGCCTCAAGTCAATTTTCACTCAGGAAGGGCACAGAGGATGCTTCAGCCATATAATGGTATTGGAGACAGCAGATTTCAGGAGAAAACGTTGTCTGCAACATCATTTATCTGCAAAGATATACTGTCTAGTGGTCTTTATTATCCAGAGAAGCTTGGAGAAAATGATTGGTGTAAGCGTATAAAAGTCGAGGGCAAGAATGATTATAATTCTCTGTCTGCGACTTCACTGGGCAACAGGCATCTGAATATGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGATTCCTCCTTTTCAAGAAAATGGAACTAGTGCAGCACCTACAGGAAACATGTTAAGCGAGACAACCTGCCAATATTCACATAATGTGGGAGGCCCCCATATCGACACACATCCATTATTCCACCACACTACCTTATCAAGCGAAGACTTTGGAGCTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCAAACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCATTCACAAAGTGCATCAAGCCATCCATCCACAGTTCACTTGCCTCGTGCTTTCATTATGTCCGATAGTCAATCGAATTACAGCATGAGTGAACTCTCCGAAAAGTTCATGGGAGTGAGCTCACAGGCTTCTTCAACTGGGATTTCGAGTAAGTTTGCCTCAGGGATGAGTGAAGCTCAAATAGGTCCCATGCTGACGTGTGAAAGTAGTGATCGTACTGTCATCTTTCAGATCCCTGATGGAGTTCTCCATAGATCAGGTTTGGCAAATGCCAAGGCTAATCTTTCCTATGAACGCACTCCAACTATTGACTTGCTACAACTTTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCATGCAGGACTCTGCGTAG 1647 42.74 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLSGGAQHVENQSFGELEFPQMVGKQLPDDSVSDVLNTKIDGGRNLNLVLPSSHPLHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQIAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVNFHSGRAQRMLQPYNGIGDSRFQEKTLSATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKNDYNSLSATSLGNRHLNMKSPLLPYDFEVQIPPFQENGTSAAPTGNMLSETTCQYSHNVGGPHIDTHPLFHHTTLSSEDFGAYDAASTIQGLSGIPNSGCALSLLSSHSQSASSHPSTVHLPRAFIMSDSQSNYSMSELSEKFMGVSSQASSTGISSKFASGMSEAQIGPMLTCESSDRTVIFQIPDGVLHRSGLANAKANLSYERTPTIDLLQLSSQLQRVEHQRHSMQDSA 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68810310 68816578 + Hsped.07g24460.1 Hepe07g2446 575841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2446 548 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe07g2446 548 MobiDBLite consensus disorder prediction 1 22 - -
Hepe07g2446 548 Gene3D - 169 238 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe07g2446 548 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Hepe07g2446 548 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677(InterPro)
Hepe07g2446 548 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 111 540 IPR044817 GO:0003677(InterPro)
Hepe07g2446 548 MobiDBLite consensus disorder prediction 98 117 - -
Hepe07g2446 548 Pfam SBP domain 177 250 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2446 Hepe-Chr7:68810310 Hepe09g0038 Hepe-Chr9:324789 7.78e-34 dispersed
Hepe07g2446 Hepe-Chr7:68810310 Hepe09g0288 Hepe-Chr9:2465397 1.68e-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56053 PF03110 SBP 1.10E-31 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2446 - - - 0.0