Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2446 ATGGAGTCTTGGAACTATGGTTCTCAAGGGAAGGGATTTTTGTCTGATGAGATGAATTCTTCTACTAATTCTCCTCTGAGAAGTAAATACTCTTTATTGGGTTGGGAATTCAAGAACCCATGTAGTTTTGGGGACAACATGCTTCTTTCGGGTGGTGCTCAGCATGTGGAGAATCAGAGCTTTGGGGAACTGGAATTTCCCCAAATGGTTGGAAAACAATTGCCTGATGATTCTGTCAGTGATGTCCTGAATACCAAAATTGATGGTGGGAGAAACTTGAATCTTGTTTTGCCTTCCTCTCATCCACTTCATGGAGAAGAGGAGTCCACTTCAAAGCTCTCTGGCTCCATTGTAGACTCTAACAATCGAGATTCGTCTCTTATTGATTTGAAGTTAGGCAGATTTATTGATCAAGGGGATGCTCACAGTTCCAAATACTCCAAGAGAGCTGCAATTTCATCTTCCACTGAGTCATCAACTTCTCAGAAGAAAATGAGATCTCAAGGGGTGAATTTCCAGATTGCGTTTTGTCAAGTTTATGGCTGTAACAAGGATCTCAGCTCCTCTAAAGACTATCACAAGAGGCATAAAGTTTGTGAAGTTCATTCAAAGACTGCCAAAGTTATTGTTAATGGCATAGAACAGAGGTTTTGTCAGCAATGTAGCAGGTTTCATTTGCTTGCTGAATTTGATGATGGTAAACGCAGCTGTCGAAAACGGCTTGCAGGCCACAATGAACGCAGAAGAAAGCCTCAAGTCAATTTTCACTCAGGAAGGGCACAGAGGATGCTTCAGCCATATAATGGTATTGGAGACAGCAGATTTCAGGAGAAAACGTTGTCTGCAACATCATTTATCTGCAAAGATATACTGTCTAGTGGTCTTTATTATCCAGAGAAGCTTGGAGAAAATGATTGGTGTAAGCGTATAAAAGTCGAGGGCAAGAATGATTATAATTCTCTGTCTGCGACTTCACTGGGCAACAGGCATCTGAATATGAAATCTCCCTTGCTTCCCTATGATTTTGAAGTACAGATTCCTCCTTTTCAAGAAAATGGAACTAGTGCAGCACCTACAGGAAACATGTTAAGCGAGACAACCTGCCAATATTCACATAATGTGGGAGGCCCCCATATCGACACACATCCATTATTCCACCACACTACCTTATCAAGCGAAGACTTTGGAGCTTATGATGCAGCATCAACCATCCAAGGACTTTCTGGAATTCCAAACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCATTCACAAAGTGCATCAAGCCATCCATCCACAGTTCACTTGCCTCGTGCTTTCATTATGTCCGATAGTCAATCGAATTACAGCATGAGTGAACTCTCCGAAAAGTTCATGGGAGTGAGCTCACAGGCTTCTTCAACTGGGATTTCGAGTAAGTTTGCCTCAGGGATGAGTGAAGCTCAAATAGGTCCCATGCTGACGTGTGAAAGTAGTGATCGTACTGTCATCTTTCAGATCCCTGATGGAGTTCTCCATAGATCAGGTTTGGCAAATGCCAAGGCTAATCTTTCCTATGAACGCACTCCAACTATTGACTTGCTACAACTTTCATCACAACTCCAGCGAGTGGAACATCAAAGGCACTCCATGCAGGACTCTGCGTAG 1647 42.74 MESWNYGSQGKGFLSDEMNSSTNSPLRSKYSLLGWEFKNPCSFGDNMLLSGGAQHVENQSFGELEFPQMVGKQLPDDSVSDVLNTKIDGGRNLNLVLPSSHPLHGEEESTSKLSGSIVDSNNRDSSLIDLKLGRFIDQGDAHSSKYSKRAAISSSTESSTSQKKMRSQGVNFQIAFCQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVNFHSGRAQRMLQPYNGIGDSRFQEKTLSATSFICKDILSSGLYYPEKLGENDWCKRIKVEGKNDYNSLSATSLGNRHLNMKSPLLPYDFEVQIPPFQENGTSAAPTGNMLSETTCQYSHNVGGPHIDTHPLFHHTTLSSEDFGAYDAASTIQGLSGIPNSGCALSLLSSHSQSASSHPSTVHLPRAFIMSDSQSNYSMSELSEKFMGVSSQASSTGISSKFASGMSEAQIGPMLTCESSDRTVIFQIPDGVLHRSGLANAKANLSYERTPTIDLLQLSSQLQRVEHQRHSMQDSA 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68810310 68816578 + Hsped.07g24460.1 Hepe07g2446 575841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2446 548 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe07g2446 548 MobiDBLite consensus disorder prediction 1 22 - -
Hepe07g2446 548 Gene3D - 169 238 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe07g2446 548 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Hepe07g2446 548 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677(InterPro)
Hepe07g2446 548 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 111 540 IPR044817 GO:0003677(InterPro)
Hepe07g2446 548 MobiDBLite consensus disorder prediction 98 117 - -
Hepe07g2446 548 Pfam SBP domain 177 250 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2446 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2446 Hepe-Chr7:68810310 Hepe09g0038 Hepe-Chr9:324789 7.78e-34 dispersed
Hepe07g2446 Hepe-Chr7:68810310 Hepe09g0288 Hepe-Chr9:2465397 1.68e-205 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1180 . 180 1013 SBP-box Gene Family AT2G47070 55.7 3.3e-241 831.6
Hepe02g1180 . 25 1013 SBP-box Gene Family AT3G60030 54.9 9.0e-281 963.4
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50570 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50570 67.0 7.3e-37 151.8
Hepe05g0545 . 5 177 SBP-box Gene Family AT3G57920 52.9 2.2e-38 156.8
Hepe07g2446 . 121 279 SBP-box Gene Family AT1G69170 53.5 3.2e-41 166.4
Hepe05g0545 . 10 176 SBP-box Gene Family AT2G42200 55.6 3.0e-41 166.4
Hepe02g1180 . 180 1013 SBP-box Gene Family AT2G47070 55.7 3.3e-241 831.6
Hepe07g2446 . 121 279 SBP-box Gene Family AT1G69170 53.5 3.2e-41 166.4
Hepe05g0545 . 10 176 SBP-box Gene Family AT2G42200 55.6 3.0e-41 166.4
Hepe02g1180 . 25 1013 SBP-box Gene Family AT3G60030 54.9 9.0e-281 963.4
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50570 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50570 67.0 7.3e-37 151.8
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50670 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50670 67.0 7.3e-37 151.8
Hepe05g0545 . 5 177 SBP-box Gene Family AT3G57920 52.9 2.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001097 2 4 1 1 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 5 12 1 80
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56053 PF03110 SBP 1.10E-31 No_clan Hepe TF