Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2448 ATGATTTCTCTGGCAGCGGCATATGACTCGCTGGATCCGAATGGAAACATTGAAATCAAATGGGATGTCATGTACTGGACTGGCGATGGTTATGGGGCAATGGTGTCGATAACGAACCACCAAATGTATCGACATATCACGAGCCCCGGATGGACCTTGGGATGGGTATGGGCAAAGAATGAGATCATCTGGTCCATGCAGGGAGCTCAAGCTACTGATCAAGGAGATTGTTCTACATCTAGAGAAACCATCCCACACAGCTGCAAAAGAGATCCAACAGTAGTTGACTTGCTTCCAGGTGTTCCTTATAACAAACAGGTAGCTGGGTGCTGCAAAGGTGGTGTTTTGACATCTTGGGGACAAGATCCTTCATCTGCTGTCTCTGCCTTCCAATTGACTGTTGGTCACTCTGGTACTTCAAATAAAACAGTGAGACTTCCCAAGAATTTCACCTTGTATGGTCCAGGGCTAGGTTACACATGTGGCCAAGCAAAGATTGCTCCGGCATCGACTTTCTACTCGCCTGATGGTCGTCGAAAAACTAATGCATTGATGACTTGGAATGTGATATGCACTTACTCACAGTTTCTTGCTTCTGAAACTCCAACCTGTTGTGTCTCCATGTCATCTTTCTACAACCCAACAATCACTCCTTGTAAAACATGTGCTTGTGGCTGCCAAGGCAGAACAGCATGTATCCTGGCCGAGTCGGATCTTCAAAGCGTTACGGCATTGAATGCATCTACAAATGACAATGCTCCATTGCTGCAGTGCACGGGACATAACTGTCCTATTCAAGTTCACTGGCATGTTAAGGAAAACTACAAGGGATATTGGCGAGTCAAGATAACAATCAGCAATCTCAACTATCAACTTAACTACTCACAATGGACTCTTGTCGTCGAGCATCCCAATTTCAACAACACATTGGAAGTTTATAGCTTTGTCTATAAGCCACTCACCCCCTTCATCTCTAAGAATGACACAGCTCTATTCCATGGCTTAAAATCTATCAACGATGTGCTACTTCAAGCAGGGCCAAATGGAAACGTTAACTCAGAGATGATTCTTCAGAAGGATTCACCATTTACATTTGAACACGGCTGGGCGTTCCCTCGAAAAGTTTACTTCGATGGAGATGAATGTGTGATGCCCCTTCCTGATTCTTACCCCTTCCTACCCAACTTAGCTAATGGAAATCCAATTCTATTGTCAACACTTGCTTGCATTTTGCTTCCCATATTCCTTACATTGTTATCTTAG 1263 44.26 MISLAAAYDSLDPNGNIEIKWDVMYWTGDGYGAMVSITNHQMYRHITSPGWTLGWVWAKNEIIWSMQGAQATDQGDCSTSRETIPHSCKRDPTVVDLLPGVPYNKQVAGCCKGGVLTSWGQDPSSAVSAFQLTVGHSGTSNKTVRLPKNFTLYGPGLGYTCGQAKIAPASTFYSPDGRRKTNALMTWNVICTYSQFLASETPTCCVSMSSFYNPTITPCKTCACGCQGRTACILAESDLQSVTALNASTNDNAPLLQCTGHNCPIQVHWHVKENYKGYWRVKITISNLNYQLNYSQWTLVVEHPNFNNTLEVYSFVYKPLTPFISKNDTALFHGLKSINDVLLQAGPNGNVNSEMILQKDSPFTFEHGWAFPRKVYFDGDECVMPLPDSYPFLPNLANGNPILLSTLACILLPIFLTLLS 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68827158 68829096 + Hsped.07g24480.1 Hepe07g2448 575843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2448 420 PANTHER PROTEIN COBRA 3 411 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Hepe07g2448 420 Pfam COBRA-like protein 31 194 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Hepe07g2448 420 PIRSF COBRA 1 420 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2448 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2448 Hepe-Chr7:68827158 Hepe09g0286 Hepe-Chr9:2451841 3.82e-206 dispersed
Hepe05g1403 Hepe-Chr5:62902835 Hepe07g2448 Hepe-Chr7:68827158 1.03e-39 transposed
Hepe07g1196 Hepe-Chr7:28357473 Hepe07g2448 Hepe-Chr7:68827158 4.74e-30 transposed
Hepe02g0921 Hepe-Chr2:11095838 Hepe07g2448 Hepe-Chr7:68827158 1.10e-215 wgd
Hepe07g2448 Hepe-Chr7:68827158 Hepe09g0285 Hepe-Chr9:2448414 2.21e-195 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g419 . . Bda02g00096 . . . . . Cmo13g00564 Cmo18g00449 . . . . . Cpe09g00758 . . . . . . . . . . . . . . . Cone1ag0261 Cone5ag1586 . . . . . . . Blo14g00830 . . . . . . . . . . Cma18g00472 Car13g00425 Car18g00442 . Cpe20g00519 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla03g00643 Cam03g0759 Cec03g0729 Cco03g0763 Clacu03g0689 Cmu03g1282 Cre03g1039 Lsi02g00890 Csa01g02234 . Cme12g01200
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0285 . 48 447 COBRA Gene Family AT5G60920 79.6 4.1e-209 724.2
Hepe02g0922 . 42 479 COBRA Gene Family AT5G60920 69.2 6.3e-194 673.7
Hepe09g0286 . 115 514 COBRA Gene Family AT5G60920 68.9 1.7e-178 622.5
Hepe02g0921 . 64 459 COBRA Gene Family AT5G60920 67.9 2.2e-178 622.1
Hepe07g2448 . 19 416 COBRA Gene Family AT5G60920 61.7 1.1e-150 530.0
Hepe07g0518 . 57 442 COBRA Gene Family AT5G60920 54.8 7.6e-131 464.2
Hepe09g0285 . 18 452 COBRA Gene Family AT3G02210 74.1 1.4e-207 719.2
Hepe02g0922 . 12 485 COBRA Gene Family AT3G02210 67.6 1.2e-196 682.9
Hepe02g0921 . 38 462 COBRA Gene Family AT3G02210 66.6 3.4e-180 628.2
Hepe09g0286 . 87 513 COBRA Gene Family AT3G02210 66.5 3.7e-179 624.8
Hepe07g2448 . 5 412 COBRA Gene Family AT3G02210 60.2 1.6e-153 539.7
Hepe07g0518 . 27 458 COBRA Gene Family AT3G02210 54.7 5.8e-140 494.6
Hepe09g0285 . 16 446 COBRA Gene Family AT3G29810 73.9 5.8e-201 697.2
Hepe02g0922 . 26 485 COBRA Gene Family AT3G29810 66.1 6.6e-189 657.1
Hepe02g0921 . 47 461 COBRA Gene Family AT3G29810 66.5 2.6e-177 618.6
Hepe09g0286 . 98 496 COBRA Gene Family AT3G29810 67.7 5.4e-175 610.9
Hepe07g2448 . 7 419 COBRA Gene Family AT3G29810 59.5 2.9e-152 535.4
Hepe07g0518 . 39 456 COBRA Gene Family AT3G29810 53.8 6.9e-138 487.6
Hepe02g0921 . 42 372 COBRA Gene Family AT5G15630 83.4 6.9e-178 620.2
Hepe09g0286 . 92 423 COBRA Gene Family AT5G15630 83.4 7.7e-177 616.7
Hepe09g0285 . 31 361 COBRA Gene Family AT5G15630 73.5 4.2e-151 531.2
Hepe02g0922 . 27 357 COBRA Gene Family AT5G15630 68.3 6.3e-147 517.3
Hepe07g2448 . 5 323 COBRA Gene Family AT5G15630 64.3 4.7e-134 474.6
Hepe02g0922 . 8 218 COBRA Gene Family AT5G60950 58.2 2.4e-64 242.3
Hepe09g0285 . 18 224 COBRA Gene Family AT5G60950 56.3 2.6e-63 238.8
Hepe02g0921 . 41 240 COBRA Gene Family AT5G60950 54.2 3.3e-58 221.9
Hepe09g0286 . 111 291 COBRA Gene Family AT5G60950 56.4 1.8e-56 216.1
Hepe07g2448 . 15 195 COBRA Gene Family AT5G60950 50.3 1.7e-46 183.0
Hepe07g0518 . 30 439 COBRA Gene Family AT1G09790 59.6 3.2e-151 531.9
Hepe09g0286 . 101 494 COBRA Gene Family AT1G09790 53.7 3.3e-132 468.8
Hepe09g0285 . 32 432 COBRA Gene Family AT1G09790 53.1 7.5e-132 467.6
Hepe02g0921 . 36 444 COBRA Gene Family AT1G09790 51.5 5.3e-130 461.5
Hepe05g1403 . 31 645 COBRA Gene Family AT4G16120 65.7 8.8e-254 873.2
Hepe07g1196 . 67 676 COBRA Gene Family AT4G16120 53.6 7.8e-202 700.7
Hepe01g1303 . 22 469 COBRA Gene Family AT4G16120 54.4 6.5e-156 548.1
Hepe05g1403 . 6 651 COBRA Gene Family AT3G16860 61.9 7.6e-242 833.6
Hepe07g1196 . 58 668 COBRA Gene Family AT3G16860 51.1 2.3e-190 662.5
Hepe01g1303 . 22 485 COBRA Gene Family AT3G16860 51.6 4.6e-146 515.4
Hepe05g1403 . 9 632 COBRA Gene Family AT5G49270 61.8 1.1e-240 829.7
Hepe07g1196 . 59 661 COBRA Gene Family AT5G49270 51.4 2.5e-192 669.1
Hepe01g1303 . 23 491 COBRA Gene Family AT5G49270 50.6 1.1e-150 530.8
Hepe07g1196 . 1 680 COBRA Gene Family AT3G20580 59.6 6.6e-249 857.1
Hepe05g1403 . 24 647 COBRA Gene Family AT3G20580 53.2 6.1e-202 701.0
Hepe01g1303 . 26 492 COBRA Gene Family AT3G20580 61.6 4.4e-184 641.7
Hepe07g1196 . 51 681 COBRA Gene Family AT4G27110 60.7 2.9e-236 815.1
Hepe05g1403 . 27 647 COBRA Gene Family AT4G27110 52.0 1.6e-194 676.4
Hepe01g1303 . 26 468 COBRA Gene Family AT4G27110 63.3 1.7e-175 613.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73