Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2449 ATGGAAGGCAGCTTCGAACAGACCCATCAAGATGGAAAGCTTTATAGACAAGTCAATTCTCTCGTTGTTGCTCATCTTCGCGATCACAACCTCACCCAGGCTGCAATTGCGGCTGCTTCAGCTACAATGACGCCACTGAATGTTGATATTCTGCCTAATAAGCTTATGGAGCTCGTTGCAAAGGGTCTTGCAGTGGAGAAAGATGAGATGTTAAGAGGGAATCACGAATTTGGTTCATCAGTGCCCACTACATATGGATCTACACAGGCCTCTCGTGCTTCTGCCATCAATTTCAGCTCTGCGCAGGATACGAAAGGTTCGTCGAAGAATTTTCCAAAGCACGAGACTCGACATCTTTCGGAGCATAAGAATGTTGCCAGATGTGCAAGGTTCAGTGCTGATGGGAGATTTGTAGCCACTGGAAGCGCGGATATGTCGATAAAGCTGTTTGAGGTGGCTAAGATCAAGCAGATGATGCTGCCCGAGGCAAAAGATGGTCCTGTCCGACCTGTTATAAGGACATTTTACGATCACATTCAACCAATAAATGATTTAGAGTTTCATCCTCAGAATACTGTTCTTATATCCGGTGCAAAAGATCACACTATAAAGTTCTTTGACTTCTCCAAATTAACTGCAAAGAAAGCATTTAGAGTTATCCAGGATACCCATAACGTGCGCTCGATATCTCTTCATCCTTCAGGAGATTATCTTTTAGCGGGAACGGATCATCCCATTCCCCACCTGTATGATGTCAATACTTTTCAATGCTTTCTATCTGCAAATGTTCCAGAAATAGGAAATAATGGAGCCATAAATCAGGTTAGGTATTCAGCAACAGGTAGTATGTATGTCACTGCTTCAAAAGACGGTGCAGTTCGTTTATGGGACGGCGTTAGTGCGAAATGTCTCCGCTCCATGGTTGGTGCACATGGTACAGCGGAGGCAACCAGTGCAAAATTTACAAAGGATGAAAAGTTCATTCTTTCTTGTGGAAAGGACTCCACTGTAAAGCTTTGGGACGTCGGGACGGGGAAACTGGTCAAACAATATGTTGGAGCTACTCATATGCAATTGAGGTGTCAGGCTGTCTTCAATGATACTGAGGAGTTTGTTCTATCAGTAGATGAACCAAGCAATGAGATTGTTGTCTGGGATGCAATGACAGCAGAGAGAGTAGCAAGGTGGCCTTCGAACCACATCGGTGCACCCCGGTGGCTCGAGCATTCACCAACAGAGTCAGCTTTCATTTCCTGCGGGACCGATAAATCGATACGCTTTTGGAAGGAAACTCTCTAA 1299 44.8 MEGSFEQTHQDGKLYRQVNSLVVAHLRDHNLTQAAIAAASATMTPLNVDILPNKLMELVAKGLAVEKDEMLRGNHEFGSSVPTTYGSTQASRASAINFSSAQDTKGSSKNFPKHETRHLSEHKNVARCARFSADGRFVATGSADMSIKLFEVAKIKQMMLPEAKDGPVRPVIRTFYDHIQPINDLEFHPQNTVLISGAKDHTIKFFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHPIPHLYDVNTFQCFLSANVPEIGNNGAINQVRYSATGSMYVTASKDGAVRLWDGVSAKCLRSMVGAHGTAEATSAKFTKDEKFILSCGKDSTVKLWDVGTGKLVKQYVGATHMQLRCQAVFNDTEEFVLSVDEPSNEIVVWDAMTAERVARWPSNHIGAPRWLEHSPTESAFISCGTDKSIRFWKETL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68832115 68837947 + Hsped.07g24490.1 Hepe07g2449 575844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2449 432 Gene3D - 99 431 IPR015943 GO:0005515(InterPro)
Hepe07g2449 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 216 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 160 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
Hepe07g2449 432 SUPERFAMILY WD40 repeat-like 111 429 IPR036322 GO:0005515(InterPro)
Hepe07g2449 432 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 3 431 IPR044633 GO:0003723(PANTHER)|GO:0005848(InterPro)|GO:0005848(PANTHER)|GO:0031124(InterPro)
Hepe07g2449 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 306 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 Pfam WD domain, G-beta repeat 407 428 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 Pfam WD domain, G-beta repeat 267 297 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 Pfam WD domain, G-beta repeat 172 207 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 Pfam WD domain, G-beta repeat 116 150 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 Pfam WD domain, G-beta repeat 223 243 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 Pfam WD domain, G-beta repeat 302 341 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 FunFam Cleavage stimulation factor subunit 50 102 432 - -
Hepe07g2449 432 MobiDBLite consensus disorder prediction 99 119 - -
Hepe07g2449 432 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 350 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 SMART WD40_4 168 207 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 SMART WD40_4 389 429 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 SMART WD40_4 254 297 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 SMART WD40_4 300 341 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 SMART WD40_4 213 251 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 SMART WD40_4 112 151 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 SMART WD40_4 344 386 IPR001680 GO:0005515(InterPro)
Hepe07g2449 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 297 - -
Hepe07g2449 432 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Hepe07g2449 432 PRINTS G protein beta WD-40 repeat signature 416 430 IPR020472 -
Hepe07g2449 432 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Hepe07g2449 432 CDD WD40 115 429 - -
Hepe07g2449 432 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 175 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2449 K14406 - - csv:101206503 806.979
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g447 . . . . . . . . Cmo13g01108 . . . . . . Cpe20g00085 . . . . . . . . . . . . . . . . Cone16ag0219 . . Lsi02g00134 Csa01g00616 Chy12g01484 Cme12g01925 . . Bda11g01767 . . . . . Sed08g2132 . . Cma13g01063 . Car13g00899 . . . Bhi08g01068 Tan05g2342 Cmetu12g1898 Lac10g0178 Hepe07g2449 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009578 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 32