Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2451 ATGGGAAGCCAGAGAGTTCCTCTGCTTGATCGTGGGGGCAGGGGAAAAAACCTTTCAGAAGATCGTCAGTTAACAGACCTGGAGCATGGGGATGCTGTACCGCCTGCAAATGTTGGATTTGGCAGAGTACTTTCACTTGCAAAGCCTGAAGTGGGGAAGTTGACAATTGCTACTATTGCTCTTCTGATTGCTTCCACATCAAGTATATTGATACCAAAATTCGGTGGAAAGATTATTGACATTGTATCTGGAGATATCGACACACCCGAACAGAAAAGCAAAGCTCTAAAGGAAGTCACAAACACCATTGTATACATCACATCGATCGTCTTAGTTGGTTCGGTGTGCTCAGCTATTCGAGCTTGGTTATTTTCTTCCTCTAGTGAGAGGGTTGTTGCTCGCTTAAGGAAGAATTTGTTTACTCATCTTCTTAATCAGGAAATAGCCTTCTTTGACATTACTCGAACAGGCGAACTTCTTAGTAGGCTATCTGAGGATACCCAAATCATTAAGAATGCAGCAACTACCAATCTTTCCGAGGCCCTAAGAAATCTATCAACTGCATTAATTGGGTTGACCTTCATGTTTTCAACTTCTTGGAAGTTAACATTATTGGCTTTGGTTGTTGTCCCTGTTATTTCTGTCGCTGTTCGTAAATTTGGTCGCTTTCTTCGCGAGCTTTCTCACAAGACTCAAGCAGCAGCTGCTGTCTGTGCTTCAATTGCTGAGGAATCTTTTGGTGCCGTACGCACTGTCAGATCTTTTGCTCAAGAATCCTACGAGATATCACGGTACTCTCAGAAAGTCGAGGAGACATTGCAACTTGGACTTACACAAGCTAAAGTTGTTGGATTATTCTCGGGAGGTCTCTATGCAGCATCGACCTTATCGGTTATTGTAGTTGTGATATATGGAGCTAATTTGACAATCAAAGGGTTCATGACTCCGGGAGCTCTGACATCTTTCATCCTTTATAGTTTAACAGTTGGAACCTCCGTATCTGGGTTGTCAGGATTGTACACTGTAGCCATGAAAGCTGCTGGAGCTAGTAGACGAGTTTTTCAGCTCCTGGATCGTGTATCAACAATGACAAATTCAGGAAATAAATGCCCTATTGGTGATCAAGATGGAGAAGTTGAGTTGGACGATGTTTGGTTTTCCTATCCGTCCCGCCCTAATCACACTGTGCTGAAGGGAGTAACATTGAGATTGCAACCTGGCTCAAAAGTAGCTCTCGTTGGTCCGAGTGGCGGTGGAAAAACCACCATAGCAAACCTGATTGAAAGATTTTATGATCCTACTAAAGGACGGATTCTGATAAATGGAGTTTCTCTGATGGAGATATCACATGAACATTTACACAAAAGGATCAGTATTGTCAGCCAGGAGCCTATTCTTTTCAACTGCTCCATAGAGGAGAACATAGCCTATGGTTTAGATGGCAAAGTTGATAGCATTGATGTAGAAAATGCAGCTAAAATGGCCAATGCACATGACTTCATATCAAATTTCCCTGAGAAGTATAAAACCCATGTTGGAGAACGCGGAGTAAGGCTGTCGGGCGGTCAGAAACAAAGAGTAGCTATAGCAAGAGCCCTACTTATGAACCCAAGAATTCTCCTTTTGGATGAAGCCACAAGCGCTCTAGATGCTGAAAGTGAACACCTAGTACAGGATGCAATGGATTCTTTGATGAAAGGCAGGACTGTGCTCGTCATTGCTCATAGGTTATCTACCGTCAAGACAGCAGACACCGTGGCCGTTGTTTCTGATGGTCAAATTGTTGAAAGTGGAACACATGAAGAACTTCTTAGCAAGGATGGTGTCTACAATGCACTAGTGAAGAGGCAACTGCAAGATACAAAAACAACATGA 1875 42.99 MGSQRVPLLDRGGRGKNLSEDRQLTDLEHGDAVPPANVGFGRVLSLAKPEVGKLTIATIALLIASTSSILIPKFGGKIIDIVSGDIDTPEQKSKALKEVTNTIVYITSIVLVGSVCSAIRAWLFSSSSERVVARLRKNLFTHLLNQEIAFFDITRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTALIGLTFMFSTSWKLTLLALVVVPVISVAVRKFGRFLRELSHKTQAAAAVCASIAEESFGAVRTVRSFAQESYEISRYSQKVEETLQLGLTQAKVVGLFSGGLYAASTLSVIVVVIYGANLTIKGFMTPGALTSFILYSLTVGTSVSGLSGLYTVAMKAAGASRRVFQLLDRVSTMTNSGNKCPIGDQDGEVELDDVWFSYPSRPNHTVLKGVTLRLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGRILINGVSLMEISHEHLHKRISIVSQEPILFNCSIEENIAYGLDGKVDSIDVENAAKMANAHDFISNFPEKYKTHVGERGVRLSGGQKQRVAIARALLMNPRILLLDEATSALDAESEHLVQDAMDSLMKGRTVLVIAHRLSTVKTADTVAVVSDGQIVESGTHEELLSKDGVYNALVKRQLQDTKTT 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 68863093 68867783 + Hsped.07g24510.1 Hepe07g2451 575846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2451 624 MobiDBLite consensus disorder prediction 1 26 - -
Hepe07g2451 624 ProSitePatterns ABC transporters family signature. 519 533 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g2451 624 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 379 616 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g2451 624 Pfam ABC transporter 397 547 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g2451 624 CDD ABC_MTABC3_MDL1_MDL2 379 617 - -
Hepe07g2451 624 CDD ABC_6TM_AtABCB27_like 57 353 - -
Hepe07g2451 624 FunFam ABC transporter B family member 25 106 376 - -
Hepe07g2451 624 Gene3D - 377 620 IPR027417 -
Hepe07g2451 624 FunFam ABC transporter B family member 25 377 619 - -
Hepe07g2451 624 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 345 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Hepe07g2451 624 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 35 618 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Hepe07g2451 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 617 IPR027417 -
Hepe07g2451 624 PIRSF ABC_prm/ATPase_B 14 624 - -
Hepe07g2451 624 SUPERFAMILY ABC transporter transmembrane region 42 358 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe07g2451 624 Gene3D ABC transporter type 1, transmembrane domain 104 376 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Hepe07g2451 624 SMART AAA_5 406 600 IPR003593 GO:0016887(InterPro)
Hepe07g2451 624 Pfam ABC transporter transmembrane region 55 331 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2451 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g1310 Hepe-Chr6:63188894 Hepe07g2451 Hepe-Chr7:68863093 1.19e-32 dispersed
Hepe07g2451 Hepe-Chr7:68863093 Hepe10g1472 Hepe-Chr10:51590463 9.30e-111 dispersed
Hepe07g2451 Hepe-Chr7:68863093 Hepe08g2014 Hepe-Chr8:56421091 3.26e-103 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g451 . . . . . . . . Cmo13g01110 Cmo18g00009 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0217 . . Lsi02g00130 Csa01g00613 Chy12g01487 Cme12g01928 . . Bda11g01766 . . . . . . . . Cma13g01065 Cma18g00008 Car13g00901 . Cpe09g01165 . Bhi08g01071 . . Lac10g0176 Hepe07g2451 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 34