Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2473 ATGAATCCTGATAAATTCACCCACAAGACTAATGAGGCACTCGCCGGAGCTCACGAATTGGCTTTGAATTCCGGCCATGCTCAACTGACACCACTTCATTTGGCGGTTGCTTTGATTTCTGATTCGAGTGGGATCTTGAGCCAAGCGATTTCTGGTTCCGGCGGTGACAATGCCCTTAAAGAAGTTGAGACAGTTTTCAAACGGGCATTGAAGAAGCTCCCATCTCAATCCCCTGCACCCGACGAAGTTCCGGCGAGTACTACTCTGATCAAGGCAATTCGAAGGGCACAAGCTGCGCAGAAATCGCGAGGCGACACGCATTTGGCCGTCGATCAATTGGTTCTTGGGCTTCTTGAGGATTCTCAGATTGGGGATTTGCTTAGAGAAGCTGGCGTAGCCACTGCGAAAGTTAAGTCTGAGGTCGAGAAACTCCGTGGAAAAGAAGGGAAGAAAGTGGAGAGTGCTTCTGGAGACACAACATTTCAGGCACTCAAAACATATGGGCGAGATCTGGTCGAACAAGCCGGGAAACTCGACCCGGTTATCGGTCGGGATGATGAAATTCGTAGAGTGGTGAGGATTTTATCGAGAAGGACTAAGAACAACCCTGTTCTTATTGGGGAGCCTGGTGTTGGAAAAACTGCAGTGGTTGAAGGATTGGCACAGAGAATTGTAAGAGGGGATGTCCCAAGTAATCTTGCTGATGTGAGGCTCATAGCTTTGGATATGGGTGCTCTGGTTGCAGGGGCAAAGTACAGGGGAGAGTTTGAAGAGAGATTGAAGGCTGTATTGAAGGAAGTTGAAGATGCACAAGGGAAAGTCATATTGTTTATTGATGAGATTCATCTTGTTCTTGGTGCTGGAAGAACAGAGGGATCTATGGATGCTGCTAACCTTTTGAAGCCTATGCTGGCTAGAGGGCAGCTTCGTTGCATTGGGGCAACTACCCTTGAAGAGTACAGGAAGTACGTCGAGAAGGATGCGGCATTCGAGAGAAGGTTTCAACAAGTTTATGTGGCTGAACCTAGCGTGCCGGATACAATCAGCATCCTTCGAGGACTGAAAGAGAGATATGAAGGTCACCATGGTGTTAGGATACAAGATCGAGCTATTGTCGTTGCGGCCCAGCTTTCGAGTCGGTACATCACTGGGCGGCACCTTCCTGATAAGGCGATTGATTTAGTTGATGAAGCTTGTGCAAATGTGAGGGTTCAGCTTGATAGTCAGCCTGAAGAAATTGATAACTTGGAGAGGAAGAGAATGCAGCTTGAAGTTGAACTTCATGCTCTTGAAAAGGAGAAGGATAAAGCTAGTAAAGCTCGTCTTGTTGAAGTGAGGAGAGAGCTTGATGATCTGAGGGATAAGCTTCAACCTTTATTGATGAAATATCGAAAGGAGAAAGAGAGGATCGATGAGATTAGAAGACTAAAACAGAGGAGGGAGGAACTACAGATAGCTTTGCAAGAGGCTGAAAGGAGATATGATTTAGCAAGAGCTGCTGATTTGCGATATGGAGCAATCCAGGAAATAGAATCTGCAATAGCACGGATTGAAGGGAACAACACCGATGAGAACCTAATGTTAACCGAAATTGTTGGACCGGAACAAATAGCAGAAGTCGTGAGCCGCTGGACTGGAATACCTGTCACGAGGCTCGGCCAGAATGATAAAGAGAGGCTAGTTGGGCTTGCTGAGAGATTGCACAAGAGAGTTGTGGGGCAGAACCAAGCGGTTGATGCCGTTGCCGAGGCGGTTTTACGATCAAGAGCTGGATTAGGAAGGCCACAGCAGCCAACTGGGTCCTTCCTGTTCTTAGGTCCAACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCGCTTGCGGAGCAACTTTTTGATGATGAAAACCTCTTGGTGAGAATTGACATGTCTGAATACATGGAACAGCACTCGGTTTCGCGCCTCATCGGTGCGCCTCCTGGGTATGTTGGCCATGAGGAAGGAGGGCAACTCACAGAGGCTGTAAGGCGGAGGCCTTACAGTGTTTTGCTGTTTGATGAAGTGGAGAAAGCTCACGTCTCTGTTTTCAACACTCTTCTTCAAGTTTTAGATGATGGAAGATTGACTGATGGTCAAGGCCGCACTGTAGATTTCAGAAACACAGTCATTATCATGACTTCTAATCTTGGAGCTGAATTTCTCCTTTCTGGGCTGATGGGCAAGTGCACAATGCAAGTAGCTCGCGATCGAGTTATGCAAGAGGTACGGAAGCACTTTAGGCCAGAGCTGCTTAATCGCCTGGATGAAATCGTTGTATTCGATCCTCTCTCGCACGATCAGCTGAGGAAAGTTGCCAGACTGCAAATGAAAGATGTTGCAGCCCGCCTGGCCGAGAGGGGCGTTGCCATGGCCGTGACCGATGCCGCTCTCGATTATGTCTTGGCAGAGAGCTACGATCCAGTAAGTATTGATCAAGAAAAGGAATACTCCTCTTTGTCTGAACAGAAATGCTAA 2490 47.71 MNPDKFTHKTNEALAGAHELALNSGHAQLTPLHLAVALISDSSGILSQAISGSGGDNALKEVETVFKRALKKLPSQSPAPDEVPASTTLIKAIRRAQAAQKSRGDTHLAVDQLVLGLLEDSQIGDLLREAGVATAKVKSEVEKLRGKEGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDDEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEDAQGKVILFIDEIHLVLGAGRTEGSMDAANLLKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRIQDRAIVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRRELDDLRDKLQPLLMKYRKEKERIDEIRRLKQRREELQIALQEAERRYDLARAADLRYGAIQEIESAIARIEGNNTDENLMLTEIVGPEQIAEVVSRWTGIPVTRLGQNDKERLVGLAERLHKRVVGQNQAVDAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENLLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVLLFDEVEKAHVSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEFLLSGLMGKCTMQVARDRVMQEVRKHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAARLAERGVAMAVTDAALDYVLAESYDPVSIDQEKEYSSLSEQKC 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 69050869 69054579 - Hsped.07g24730.1 Hepe07g2473 575868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2473 829 Gene3D - 344 545 IPR027417 -
Hepe07g2473 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 546 IPR027417 -
Hepe07g2473 829 Gene3D - 3 148 IPR036628 -
Hepe07g2473 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 810 IPR027417 -
Hepe07g2473 829 FunFam ATP-dependent chaperone ClpB 344 545 - -
Hepe07g2473 829 Pfam C-terminal, D2-small domain, of ClpB protein 768 813 IPR019489 -
Hepe07g2473 829 Pfam AAA lid domain 344 444 IPR041546 -
Hepe07g2473 829 CDD AAA 182 337 - -
Hepe07g2473 829 SUPERFAMILY Double Clp-N motif 4 157 IPR036628 -
Hepe07g2473 829 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Hepe07g2473 829 FunFam ATP-dependent Clp protease subunit 551 766 - -
Hepe07g2473 829 Pfam AAA domain (Cdc48 subfamily) 598 762 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g2473 829 Gene3D - 768 814 - -
Hepe07g2473 829 SMART AAA_5 199 344 IPR003593 GO:0016887(InterPro)
Hepe07g2473 829 SMART AAA_5 598 742 IPR003593 GO:0016887(InterPro)
Hepe07g2473 829 Coils Coil 463 500 - -
Hepe07g2473 829 Pfam Clp amino terminal domain, pathogenicity island component 17 60 IPR004176 -
Hepe07g2473 829 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Hepe07g2473 829 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Hepe07g2473 829 FunFam Chaperone clpB 1, putative 152 343 - -
Hepe07g2473 829 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524(InterPro)
Hepe07g2473 829 Coils Coil 253 273 - -
Hepe07g2473 829 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 602 620 IPR001270 GO:0005524(InterPro)
Hepe07g2473 829 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 676 694 IPR001270 GO:0005524(InterPro)
Hepe07g2473 829 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 647 665 IPR001270 GO:0005524(InterPro)
Hepe07g2473 829 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 709 723 IPR001270 GO:0005524(InterPro)
Hepe07g2473 829 Gene3D - 150 343 IPR027417 -
Hepe07g2473 829 ProSitePatterns Chaperonins clpA/B signature 2. 632 650 IPR028299 -
Hepe07g2473 829 FunFam ATP-dependent chaperone ClpB 1 148 - -
Hepe07g2473 829 Coils Coil 406 455 - -
Hepe07g2473 829 CDD RecA-like_ClpB_Hsp104-like 559 765 - -
Hepe07g2473 829 Gene3D - 551 767 IPR027417 -
Hepe07g2473 829 PANTHER ATP-DEPENDENT CLP PROTEASE 4 813 IPR050130 GO:0005737(PANTHER)|GO:0016887(PANTHER)|GO:0034605(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2473 K03695 - - csv:101221981 1500.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2473 Hepe-Chr7:69050869 Hepe09g0520 Hepe-Chr9:4871710 4.09e-22 dispersed
Hepe02g0872 Hepe-Chr2:10410935 Hepe07g2473 Hepe-Chr7:69050869 1.22e-267 transposed
Hepe09g0012 Hepe-Chr9:128978 Hepe07g2473 Hepe-Chr7:69050869 4.20e-206 transposed
Hepe10g1202 Hepe-Chr10:46832612 Hepe07g2473 Hepe-Chr7:69050869 1.85e-205 transposed
Hepe10g1935 Hepe-Chr10:56216938 Hepe07g2473 Hepe-Chr7:69050869 3.88e-156 transposed
Hepe07g2473 Hepe-Chr7:69050869 Hepe09g0265 Hepe-Chr9:2258534 4.69e-287 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002248 4 2 1 2 2 2 4 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 63