Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2495 ATGCAAGTTTATGAAACCGCCATTTCCGCCATTGGAAGAAGCTTCAGAGCGAGGCAACAATTTCTTTTCTCTGTATTAAACTGCTGTAAATCTGTTCGTAATCTTCCGAAAATCCATGCCCAAATAGTCGTCAGCGGCCTTACCCAGAAGAATTCCATCCTCGTCAATCTTTTATCGCTCTATATCTCTTTCGGTTATCTTGGAAGTGCCCAGAAAGTTTTCAAGGACGTTAGTGCACCGAGTACGACTCTGTGGAACCAGATAATCAGAGGCCATGCGCGGAGCAAAACGCCACAAGAATCAATCGAGCTGTTCAAACGAATGGCGGCGGCGGAAGTTGAGGCTGATGGGTTCACGTATTCGTTTCTTCTGAGTGCGTGTGCGAGTTCGAGATTATTCAGAGAGGGGGAACAGATTCACGGGAAAGTTTTAGCAAATGGGTATTACTCCAACGCGTATGTTAGAACGAATTTGATCAATCTATACGCAAATGGTGGATGGGATTTTGATTTTGAGAGTGCTCGTTATGTGTTTGATGAAATGCTCGAAAGAAATGTGGTGGGTTGGAATTCTTTGCTTGCAGGGTATGTTAGACGTGGTGATTTTGATGGTGCTAGAAAAGTTTTCGATGAGATGCCTGAGAGAAATGTCCGGACATGGACTACAATGGTTGCAGGGTTTGCTCAAAATGGCCATTGTAAGCTAGCTTTGTCATTATTCAATCAAATGAGAAGGGCTGGTGTGGAATTGGATCAGGTTTCATTGGTGGCTGCATTGTCAGCTTGTGCTGAATTGGGAGATTTGACATTAGGAAAATGGATTCATAAGTTTGTTGAAAGAACATGGCGGAGTAGACACCAACCAGTATTGGTGTCTTTGAGCAATGCTTTGATTCACATGTATGCAAGTTGTGGTGTTATGGATGAAGCACGTAAAGTGTTCGATGAAATGCCCCAACGAAACACTGTCTCTTGGTCGAGCATGATCACTGGGTTTGCGAAACAGGGCCGTGGAGAAGAAGCCATTAGAGTGTTTCAGTTGATGCTGTGCTCTGGTCAAAATGAAGTAAGACCTGATGAGATAACCTTCATTGGGGTTCTCACTGCTTGTAGTCATGCTGGTTTAATCAGCGATGGCCTCCAACTTTTCCGGTCTATGCACGAAGCTTTCGGAGTCAGCCCGCAGATTGAGCATTATGGATGCATGGTTGATCTCCTGAGCCGTGCAGGTTTACTGAGTGAAGCATTGAGGCTGATTGAAAGTATGCCAATGAAGCCAAACAATGCTGTGTGGGGAGCACTTCTCGGTGGCTGCAGAATTCACAAGAACGACAAAATCGCATCCCATGTTGCCGAAAAATTGGCTTTCGAAATCGATCCCGGCAACCAAGCTGCTGGATACTTCATGCTCCTAGCTAATGTTTATGCTGCAGATAAACGTTGGCTAGACACTGCCACTCTGAGAAAGAACATGCTAGAAATGGGAGTGAAGAAACCTACAGGAAGAAGTTGGATCGAGATTAATGGAGTCGTATATGATTTCGTGGCGGGGGATGAGACTCATAAGGATGTGAGTTTAATTTACGAGATGCTTGGTAACATAACCAGACAGACCCGGATGGAGAGCTGCAAAGCAGAGACAATATCAGAGGCATTTGTTGGTGTCTAA 1668 44.78 MQVYETAISAIGRSFRARQQFLFSVLNCCKSVRNLPKIHAQIVVSGLTQKNSILVNLLSLYISFGYLGSAQKVFKDVSAPSTTLWNQIIRGHARSKTPQESIELFKRMAAAEVEADGFTYSFLLSACASSRLFREGEQIHGKVLANGYYSNAYVRTNLINLYANGGWDFDFESARYVFDEMLERNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTTMVAGFAQNGHCKLALSLFNQMRRAGVELDQVSLVAALSACAELGDLTLGKWIHKFVERTWRSRHQPVLVSLSNALIHMYASCGVMDEARKVFDEMPQRNTVSWSSMITGFAKQGRGEEAIRVFQLMLCSGQNEVRPDEITFIGVLTACSHAGLISDGLQLFRSMHEAFGVSPQIEHYGCMVDLLSRAGLLSEALRLIESMPMKPNNAVWGALLGGCRIHKNDKIASHVAEKLAFEIDPGNQAAGYFMLLANVYAADKRWLDTATLRKNMLEMGVKKPTGRSWIEINGVVYDFVAGDETHKDVSLIYEMLGNITRQTRMESCKAETISEAFVGV 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 69304927 69307498 - Hsped.07g24950.1 Hepe07g2495 575890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2495 555 Gene3D Tetratricopeptide repeat domain 279 353 IPR011990 GO:0005515(InterPro)
Hepe07g2495 555 Gene3D Tetratricopeptide repeat domain 354 523 IPR011990 GO:0005515(InterPro)
Hepe07g2495 555 Gene3D Tetratricopeptide repeat domain 1 168 IPR011990 GO:0005515(InterPro)
Hepe07g2495 555 Pfam PPR repeat family 216 263 IPR002885 -
Hepe07g2495 555 Pfam PPR repeat family 80 128 IPR002885 -
Hepe07g2495 555 Pfam PPR repeat family 320 371 IPR002885 -
Hepe07g2495 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Hepe07g2495 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Hepe07g2495 555 FunFam Pentatricopeptide repeat-containing protein chloroplastic 138 284 - -
Hepe07g2495 555 Pfam PPR repeat 398 423 IPR002885 -
Hepe07g2495 555 Pfam E motif 441 506 IPR046848 -
Hepe07g2495 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Hepe07g2495 555 Gene3D Tetratricopeptide repeat domain 169 278 IPR011990 GO:0005515(InterPro)
Hepe07g2495 555 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 294 529 - -
Hepe07g2495 555 NCBIfam pentatricopeptide repeat 295 320 IPR002885 -
Hepe07g2495 555 NCBIfam pentatricopeptide repeat 362 394 IPR002885 -
Hepe07g2495 555 NCBIfam pentatricopeptide repeat 189 217 IPR002885 -
Hepe07g2495 555 NCBIfam pentatricopeptide repeat 219 251 IPR002885 -
Hepe07g2495 555 NCBIfam pentatricopeptide repeat 323 352 IPR002885 -
Hepe07g2495 555 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 100 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2495 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2495 Hepe-Chr7:69304927 Hepe10g1900 Hepe-Chr10:55797261 6.84e-106 dispersed
Hepe07g2495 Hepe-Chr7:69304927 Hepe09g0242 Hepe-Chr9:2092211 7.58e-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g580 Blo04g00778 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00087 . Chy12g01527 . . . . . . Bpe15g00596 . . . . . . . . . . . Bhi08g01140 . . . Hepe07g2495 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014193 0 1 1 0 1 0 1 1 1 1 0 1 1 0 1 1 1 2 0 0 1 1 1 1 1 0 1 1 1 1 23