Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2502 ATGGGAAGGGTTAAGCTGAAAATTAAGAAATTGGAGAGCACTGGTAGCAGGCAAGTGACTTATTCTAAGAGAAGGCATGGGATTTTGAAGAAAGCTCGGGAACTTGCTATACTCTGCGATATTGATATCGTTCTCCTCATGTTTTCCCCAACTGGAAGGCCGACGCTATATCAAGGTGAACGCAGCAGCGTCGAAGAGGTCATTACAAAATTTTCTCAATTGACTCCACAGGAGAGAGCTAAAAGGAAACTGGAAAGCCTTGAAGCGCTGAAGAAAACATTTAAGAAGTTAGACCACGATGTAAACATAAAAGATTTTGTGGGTTCAAGCTCTCAAGATTTTGAGGAATTGACCAATGAAGTTAGCCTATTGCGAGAACAGATTGCTGAAACACATAAGAGACTGAGCTATTGGAGGAATCCTGATAATATCAACAATATGGAACATCTCCAGCAGATGGAAGATCTAATAAGGGAGTCCCTAAACCAAACACGTCTACACAAGGAAAATTTAAGAAGACACCAATTACTCTCACAGGACTTCACTGGCCAGTATCCGGGCGGTGGGATGTCCTTACCTTTGATGATGGACGAAATGCAAGGCACTCAACCCCTGTTATGGCTTCCCAACTATGGCACTCAACATATTACTTTACCAAATGAGCATAGCTTTCTGCAACCAGGTGATGTTGAATGCTCGTTTCCAAGCTATCCGAGTTACTTCAACACTGGGAAGCAAATCGAAGCTGGAATCTCTGGTCAAGTTGATAGCATACCACAAGGTGATGGGACTTTAAATGAACTAAGTGGAACTTCTTGCTCAACACTGCAACTTGGTGACCAATATCCATACCCTACATGTGATGGTTCCAACTTCCAAGATGAAAAGAGACTGAAGCTTGAGATGGAGATGAACTTGCATGCAAATTGTGTGGAAAATCAACTAAATGGCAAATTGGAGCTCTCTGGATCTCTATATGATGATGAGCAGCATCCTTGGGCTTCTATGCCAGGGCCTTGTAGCATTCCAATGTACCACCAAAGCAATGTGTATCACCATCAACCAAATTGA 1071 42.48 MGRVKLKIKKLESTGSRQVTYSKRRHGILKKARELAILCDIDIVLLMFSPTGRPTLYQGERSSVEEVITKFSQLTPQERAKRKLESLEALKKTFKKLDHDVNIKDFVGSSSQDFEELTNEVSLLREQIAETHKRLSYWRNPDNINNMEHLQQMEDLIRESLNQTRLHKENLRRHQLLSQDFTGQYPGGGMSLPLMMDEMQGTQPLLWLPNYGTQHITLPNEHSFLQPGDVECSFPSYPSYFNTGKQIEAGISGQVDSIPQGDGTLNELSGTSCSTLQLGDQYPYPTCDGSNFQDEKRLKLEMEMNLHANCVENQLNGKLELSGSLYDDEQHPWASMPGPCSIPMYHQSNVYHHQPN 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 69351187 69356293 - Hsped.07g25020.1 Hepe07g2502 575897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2502 356 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2502 356 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe07g2502 356 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2502 356 Coils Coil 77 97 - -
Hepe07g2502 356 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2502 356 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Hepe07g2502 356 Gene3D - 14 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2502 356 Coils Coil 114 134 - -
Hepe07g2502 356 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2502 356 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2502 356 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe07g2502 356 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0652 Hepe-Chr7:7466567 Hepe07g2502 Hepe-Chr7:69351187 3.00e-22 dispersed
Hepe07g2502 Hepe-Chr7:69351187 Hepe10g0423 Hepe-Chr10:4743159 1.77e-15 dispersed
Hepe10g1754 Hepe-Chr10:54333540 Hepe07g2502 Hepe-Chr7:69351187 2.10e-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56060 PF00319 SRF-TF 9.90E-19 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2502 - - - 0.0