Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2507 ATGGGTGATCACATGGTTTTGCGTGTGGACCGCCTCATAACGCCTGAAAGTTCGCAATCGCTGCAAGGAACTACTGCTTCAGAATCTTCATCTTCTCAGAATTCGGAGCCACCTGTTTGTGCTATTGCTGTTGAAGATGTGGATGAACCTGATGGATCTGAAGAAGACCCCCTTATTCAGACGGTTGAATGTCGCATATGTCAGGAAGAGGATAGTATTAAGAATTTGGAGGTTCCTTGTGCTTGCAGTGGCAGCTTGAAGTATGCTCACAGGAAATGTGTCCAGCGATGGTGCAATGAAAAGGGAGATATAACTTGTGAAATCTGTCATCAGAATTATCATCCTGGTTATACCTTGCCCTTACCTCCCCCTCGCTCAGACGATGCCACCATTGATATCAGTGAAGGTTGGGCAGTCTCAGAAACTGCTTTAGATTTGCATGATCCACGACTTTTGGCAATGGCAGCAGCAGAGCGCCACTTTCTTGAGGCAGAATATGATGAATATGCAGATGCCAGTGCGAATGGAACGGCGTTTTGCCGATCTGCTGCGCTGATTTTATTGGCTCTTTTACTGTTGAGGCACGCTCTATACCTTACAAATGGTGATGGAGAAGATGATGCTTACACTTTCTTCTCGCTTTTATTGCTGCGAGCTGCTGGGTTTCTTCTTCCCTGCTACATCATGGCATGGGCCATCAGCATACTACAGCGTCGAAGACAACGACAGGAAGCTGCAGCACTAGCAGCAACTGAAGTTGCATTTATGCTGCAGGCAGCACAAGGTCAGAGCCTGCAATTTACCCTTGCTCCAGGGCCTGTAGTTACTCCTCATCAAGAGCCACTCCAATAA 852 47.18 MGDHMVLRVDRLITPESSQSLQGTTASESSSSQNSEPPVCAIAVEDVDEPDGSEEDPLIQTVECRICQEEDSIKNLEVPCACSGSLKYAHRKCVQRWCNEKGDITCEICHQNYHPGYTLPLPPPRSDDATIDISEGWAVSETALDLHDPRLLAMAAAERHFLEAEYDEYADASANGTAFCRSAALILLALLLLRHALYLTNGDGEDDAYTFFSLLLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATEVAFMLQAAQGQSLQFTLAPGPVVTPHQEPLQ 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 69404848 69408622 + Hsped.07g25070.1 Hepe07g2507 575902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2507 283 FunFam RING/FYVE/PHD zinc finger protein 52 120 - -
Hepe07g2507 283 CDD RING_CH-C4HC3_MARCH 64 110 - -
Hepe07g2507 283 ProSiteProfiles Zinc finger RING-CH-type profile. 56 116 IPR011016 GO:0008270(InterPro)
Hepe07g2507 283 MobiDBLite consensus disorder prediction 1 38 - -
Hepe07g2507 283 MobiDBLite consensus disorder prediction 13 38 - -
Hepe07g2507 283 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 256 IPR033275 GO:0004842(PANTHER)|GO:0016020(PANTHER)|GO:0016567(PANTHER)
Hepe07g2507 283 Pfam RING-variant domain 64 109 IPR011016 GO:0008270(InterPro)
Hepe07g2507 283 Pfam Protein of unknown function (DUF3675) 115 233 IPR022143 -
Hepe07g2507 283 SUPERFAMILY RING/U-box 61 114 - -
Hepe07g2507 283 SMART ringv_2 63 110 IPR011016 GO:0008270(InterPro)
Hepe07g2507 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 115 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2507 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2507 Hepe-Chr7:69404848 Hepe08g1730 Hepe-Chr8:32147988 2.94e-101 dispersed
Hepe02g1051 Hepe-Chr2:12966663 Hepe07g2507 Hepe-Chr7:69404848 9.89e-47 transposed
Hepe02g2655 Hepe-Chr2:74135368 Hepe07g2507 Hepe-Chr7:69404848 3.05e-50 transposed
Hepe10g1741 Hepe-Chr10:54232295 Hepe07g2507 Hepe-Chr7:69404848 7.01e-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g554 Blo04g00770 . . . . . . . Cmo13g01189 . . . . . . Cpe20g00017 . . . . . . . . . . . . . . . Cone2ag0845 Cone16ag0170 . . Lsi02g00075 Csa01g00552 Chy12g01538 Cme12g01990 . . . Bda14g00852 . Bpe15g00601 Bma03g00831 . . . . Cma13g01135 . Car13g00966 . . . Bhi08g01164 Tan05g2438 . Lac10g0079 Hepe07g2507 . . Cla04g01196 Cam04g1255 Cec01g1766 Cco01g1813 Clacu04g1285 Cmu04g1261 Cre01g1554 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000419 4 6 4 4 3 3 6 3 3 3 3 3 6 3 3 6 3 6 6 3 3 3 3 3 3 3 3 12 6 2 122