Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2512 ATGGCTCGTTTGGTCTTTGACAATATGCTGGTAAGGAGCGCGGTCTCTTGGACAGCCATGATTGCCGGGCTTGCAATGCATGGCTATGGGGAGGAAGCAATCGGATTGTTTAATGAGATGGAAGAGTCTAATATTAAGCCCGACGGTATCACCTTCATATCCATCTTGTATGCTTGTAGCCATGCCGGATTAGTTGAGTTGGGATGTTCTTATTTTTCTAGGATGGTAAATACTTATGGTATTGAACCCGTAATTGAACATTATGGTTGCATAGTTGATCTCTATGGTCGAGCTGGTAAGCTGCAGCAAGCTTTTGACTTTGTATGTCAAATGCCAATTTCACCAAATGATATTGTCTGGAGGACTCTTCTTGGAGCTTGTAGCATTCATGGTAACTTAGAACTGGCAGGGCAAGTAAAGAGACGACTCTCCAAACTCGACCCCGACAATTCTGGAGATCATGTTCTTTTGTCAAACATTTATGCTGTTGCAGGAAAATGGAAGGATGTTGCCACTTTAAGAAGATCAATGGCTCACCAGAGACTTAAGAAAACTCCTGGTTGGAGCATGATTGAAGTCGATAGAATCATGTATAGTTTTGTTGCAGGAGAAAAACAAAATGACATGGCAGTAGAGGCACATCAAAAGCTAAGGGAGATAATGTCGAGGCTGAGGATCGAAGGCGGTTATGTACCGGAAGTTGGAAGTGTGTTGCATGATATAGAAGCAGAAGAAAAGGAAGATTCTGTTTCAAATCACAGCGAGAAATTAGCAGTAGCTTTCGGGATGGCAAGGCTGCCGAGAGGTAAAACCATAAGAGTGGTGAAGAATCTAAGAATTTGCAGGGATTGTCACACTGTAATGAAGCTGATTTCTAAAGTCTATGAAGTAGAAATTGTGGTGAGAGATAGAAGTCGCTTCCACTCTTTCAGATATGGTTCTTGTTCATGCAGAGATTACTGGTAA 966 42.13 MARLVFDNMLVRSAVSWTAMIAGLAMHGYGEEAIGLFNEMEESNIKPDGITFISILYACSHAGLVELGCSYFSRMVNTYGIEPVIEHYGCIVDLYGRAGKLQQAFDFVCQMPISPNDIVWRTLLGACSIHGNLELAGQVKRRLSKLDPDNSGDHVLLSNIYAVAGKWKDVATLRRSMAHQRLKKTPGWSMIEVDRIMYSFVAGEKQNDMAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEAEEKEDSVSNHSEKLAVAFGMARLPRGKTIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFRYGSCSCRDYW 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 69455011 69457129 - Hsped.07g25120.1 Hepe07g2512 575907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2512 321 Gene3D Tetratricopeptide repeat domain 1 293 IPR011990 GO:0005515(InterPro)
Hepe07g2512 321 Pfam PPR repeat 87 111 IPR002885 -
Hepe07g2512 321 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 1 215 - -
Hepe07g2512 321 Pfam E motif 130 192 IPR046848 -
Hepe07g2512 321 Pfam DYW family of nucleic acid deaminases 229 321 IPR032867 GO:0008270(InterPro)
Hepe07g2512 321 NCBIfam pentatricopeptide repeat 15 48 IPR002885 -
Hepe07g2512 321 Pfam PPR repeat family 13 60 IPR002885 -
Hepe07g2512 321 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 193 - -
Hepe07g2512 321 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 13 47 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2512 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g2512 Hepe-Chr7:69455011 Hepe04g2035 Hepe-Chr4:75103902 1.18e-115 dispersed
Hepe07g2512 Hepe-Chr7:69455011 Hepe02g1656 Hepe-Chr2:22418981 6.89e-107 transposed
Hepe07g2512 Hepe-Chr7:69455011 Hepe05g1831 Hepe-Chr5:68639402 2.59e-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g549 . . . . . . . . Cmo13g01185 . . . . . . . . . . . . . . . . . . . . . . Cone2ag0848 . . . Lsi02g00070 Csa01g00546 Chy12g01543 Cme12g01996 . . . . . . Bma03g00827 . . . . Cma13g01131 . . . . . Bhi08g01172 . . . Hepe07g2512 . . Cla04g01201 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010028 0 6 0 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 29