Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe07g2519 ATGAGAAAAGCACTTTCGGGATCAAAGGAGTTTTTTGAATACCCTTTGGATTGTAAGCTTGCGGCCAGCCCTCAGCCCACCGCTCCTCTGCCGGCCGGCTATGGCCGCCCGCCGGATAATTCTCCTGATAAGAATGAATTCTTTATGATGGCACCACCTGATTCAACATTCAATGTCTTCCCTTCCAACCCTAAAGGCTTTAGCGAAGTTATGAAGGAGTTATTCTCATGCTTTGTGAAGACAGAGAAGAAGGAATATGATTCCCATTCTCATTCTCATTCTCATTCTCAACCCGATCTTGATCTTGTTGATACCTCCAAGAAGCCCTCTCCTAAGAGGACTTCCACCAAGGACCGCCACACCAAAGTCGACGGGCGTGGTCGTCGCACTCGAATGCCTGCTCTTTGTGCTGCTCGAGTTTTCCAACTCACCCGCGAGCTCGGCCACAAGTCCGACGGTGAAACCATCGAGTGGCTTCTTCAGCAAGCCGAACCTGCCGTCATCGCTGCCACCGGTACCGGTACCATACCTGCAAACTTCAACTCTCTCAATACATCGTTAAGAAGATCGACCACAAGCATTTCTTTACCGTCCCAACTAAGATCCTCGTCTTACTACCATCCCGGAGTGATGGCGTTCAACTCTCAACCAATCAACATGAATCCAATGACGCAAGCAAAAGAAGATCACTTCCCTGATCCGCAGCGCCAAATGGGGAGCTATCTGCTGCAACCGAGCACAGGGGCAATCCCGGCGAATATTCCGGCGAACTTCTGGATGTTTTCCGACGGGAACCTCGGCGGCGGAGGAGGCGAGTCTTTATGGAGGCTTCCGTCGGCCACCCAAGACGGCGCTTTATACAGAGGACAAAACTCCGGTGGTGGATTACGTTTCTCCAACCTGGCAGCTCCGTTGACGCTCCTCCCGGGGAAGCCATTGGGACCCACCGTGAATAATGATGGACAGTTGAATATCTACGCCGGGCAAAATCCGCCGCATGGGGCGGCGCCGGACACCGGGATATCGTAA 1029 52.48 MRKALSGSKEFFEYPLDCKLAASPQPTAPLPAGYGRPPDNSPDKNEFFMMAPPDSTFNVFPSNPKGFSEVMKELFSCFVKTEKKEYDSHSHSHSHSQPDLDLVDTSKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSTTSISLPSQLRSSSYYHPGVMAFNSQPINMNPMTQAKEDHFPDPQRQMGSYLLQPSTGAIPANIPANFWMFSDGNLGGGGGESLWRLPSATQDGALYRGQNSGGGLRFSNLAAPLTLLPGKPLGPTVNNDGQLNIYAGQNPPHGAAPDTGIS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 69524841 69530178 + Hsped.07g25190.1 Hepe07g2519 575914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe07g2519 342 ProSiteProfiles TCP domain profile. 116 170 IPR017887 -
Hepe07g2519 342 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 95 221 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe07g2519 342 MobiDBLite consensus disorder prediction 88 128 - -
Hepe07g2519 342 Gene3D - 1 85 IPR027443 -
Hepe07g2519 342 Pfam TCP family transcription factor 114 212 IPR017887 -
Hepe07g2519 342 MobiDBLite consensus disorder prediction 22 50 - -
Hepe07g2519 342 SUPERFAMILY Clavaminate synthase-like 2 82 - -
Hepe07g2519 342 MobiDBLite consensus disorder prediction 319 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe07g2519 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe07g0200 Hepe-Chr7:1767012 Hepe07g2519 Hepe-Chr7:69524841 5.32e-29 dispersed
Hepe07g2519 Hepe-Chr7:69524841 Hepe10g1486 Hepe-Chr10:51695896 1.59e-38 dispersed
Hepe10g1732 Hepe-Chr10:54154477 Hepe07g2519 Hepe-Chr7:69524841 3.12e-55 wgd
Hepe07g2519 Hepe-Chr7:69524841 Hepe09g0125 Hepe-Chr9:998999 3.40e-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2449 . 39 245 TCP Transcription Factor Family AT5G23280 65.2 1.6e-67 253.1
Hepe01g0906 . 114 332 TCP Transcription Factor Family AT5G23280 58.9 2.5e-60 229.2
Hepe03g0481 . 1 330 TCP Transcription Factor Family AT2G45680 50.1 5.0e-70 261.9
Hepe09g0125 . 35 174 TCP Transcription Factor Family AT3G47620 63.0 1.6e-42 171.0
Hepe07g2519 . 103 204 TCP Transcription Factor Family AT3G47620 82.4 3.7e-39 159.8
Hepe10g1486 . 143 234 TCP Transcription Factor Family AT3G47620 84.9 5.9e-37 152.5
Hepe09g0125 . 90 172 TCP Transcription Factor Family AT1G69690 95.2 1.0e-37 154.5
Hepe02g1690 . 42 305 TCP Transcription Factor Family AT3G27010 56.4 8.3e-61 231.1
Hepe03g1140 . 29 261 TCP Transcription Factor Family AT3G27010 52.6 3.7e-53 205.7
Hepe02g2449 . 9 244 TCP Transcription Factor Family AT5G08330 57.7 6.6e-66 247.7
Hepe01g0906 . 114 330 TCP Transcription Factor Family AT5G08330 57.9 6.1e-56 214.5
Hepe09g0277 . 29 123 TCP Transcription Factor Family AT5G60970 78.1 1.1e-37 154.5
Hepe02g0930 . 37 149 TCP Transcription Factor Family AT3G02150 67.5 7.3e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000689 5 3 3 4 4 3 5 3 3 3 3 3 3 3 3 5 3 2 4 3 3 3 3 3 3 3 3 4 3 2 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
56064 PF03634 TCP 1.40E-35 No_clan Hepe TF